View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21185_high_5 (Length: 244)
Name: NF21185_high_5
Description: NF21185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21185_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 41875499 - 41875734
Alignment:
| Q |
1 |
gttgttctctgaaatcagtggaaatcatgctgctgcattggctttggcagcaaaactaaggggaatccctgcatacgttgttactccaaaaaatgtgcca |
100 |
Q |
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| T |
41875499 |
gttgttctctgaaatcagtggaaatcatgctgctgcattggctttggcagcaaaactaaggggaatccctgcatacgttgttactccaaaaaatgtgcca |
41875598 |
T |
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| Q |
101 |
atttgtaaacttgagaatgttaagaggtatgatggtaaggttaacttttctgaggccaacatacggtcaagagatgaagttgcgaatatattgcgacaag |
200 |
Q |
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| T |
41875599 |
atttgtaaacttgagaatgttaagaggtatgatggtaaggttaacttttctgaggccaacataaggtcaagagatgaagttgcgtatatattacgacaag |
41875698 |
T |
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| Q |
201 |
aaaccggtgctatatttataccttcttctgatgatg |
236 |
Q |
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| T |
41875699 |
aaaccggtgctatatttataccttcttctaatgatg |
41875734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 40868724 - 40868504
Alignment:
| Q |
1 |
gttgttctctgaaatcagtggaaatcatgctgctgcattggctttggcagcaaaactaaggggaatccctgcatacgttgttactccaaaaaatgtgcca |
100 |
Q |
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| T |
40868724 |
gttgttctctgaaatcagtggaaaccatgctgctgcattggctctggcagcaaaactacgggggatccctgcatacattgttattcctaaaaatgcgcca |
40868625 |
T |
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| Q |
101 |
atttgtaaacttgagaatgttaagaggtatgatggtaaggttaacttttctgaggccaacatacggtcaagagatgaagttgcgaatatattgcgacaag |
200 |
Q |
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| T |
40868624 |
acatgtaaaattgagaatgtgaagcggtatggtggtcaggttatctggtctgaggccaatatgcgatcaagagaggaaactgcgaataaagtgtggcaag |
40868525 |
T |
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| Q |
201 |
aaaccggtgctatatttatac |
221 |
Q |
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| T |
40868524 |
aaactggtgctatttttatac |
40868504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 24818185 - 24817970
Alignment:
| Q |
13 |
aatcagtggaaatcatgctgctgcattggctttggcagcaaaactaaggggaatccctgcatacgttgttactccaaaaaatgtgccaatttgtaaactt |
112 |
Q |
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| T |
24818185 |
aatcagtgggaaccatgctgctgcattatctttggcagcaaagataagggggatccctgcatttattgtggttccgaaaagtgcaccatcttgtaaagtt |
24818086 |
T |
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| Q |
113 |
gagaatgttaagaggtatgatggtaaggttaacttttctgaggccaacatacggtcaagagatgaagttgcgaatatattgcgacaagaaaccggtgcta |
212 |
Q |
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| T |
24818085 |
gaaaatattaagaggtacgatggaaacgttaatttggctgaggataatatgcagtcaagagaagaagttatgaacaaagtgaggcaagaaacaagtgcta |
24817986 |
T |
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| Q |
213 |
tatttataccttcttc |
228 |
Q |
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| | |||||||||||| |
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| T |
24817985 |
tctatataccttcttc |
24817970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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