View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21185_low_2 (Length: 495)

Name: NF21185_low_2
Description: NF21185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21185_low_2
NF21185_low_2
[»] chr1 (15 HSPs)
chr1 (192-480)||(803523-803808)
chr1 (25-132)||(803868-803975)
chr1 (297-462)||(22826819-22826984)
chr1 (319-462)||(47086351-47086495)
chr1 (422-462)||(47377825-47377865)
chr1 (397-462)||(24382642-24382707)
chr1 (298-462)||(40073172-40073338)
chr1 (291-364)||(7171637-7171710)
chr1 (397-462)||(15391990-15392055)
chr1 (421-480)||(30958651-30958710)
chr1 (424-462)||(11581747-11581785)
chr1 (418-460)||(42844891-42844933)
chr1 (397-460)||(2997132-2997196)
chr1 (408-456)||(6238041-6238088)
chr1 (394-462)||(49142644-49142712)
[»] chr4 (16 HSPs)
chr4 (291-462)||(14945002-14945173)
chr4 (291-462)||(3640313-3640486)
chr4 (316-462)||(40716710-40716857)
chr4 (322-480)||(8305011-8305171)
chr4 (291-340)||(21206518-21206567)
chr4 (397-462)||(29113413-29113479)
chr4 (423-480)||(47491902-47491959)
chr4 (422-462)||(39110897-39110937)
chr4 (423-462)||(3640197-3640236)
chr4 (421-480)||(53720726-53720785)
chr4 (397-462)||(1923065-1923131)
chr4 (424-462)||(5065845-5065883)
chr4 (424-462)||(39110709-39110747)
chr4 (417-459)||(45684251-45684293)
chr4 (397-458)||(33629828-33629889)
chr4 (291-368)||(45684309-45684386)
[»] chr7 (19 HSPs)
chr7 (319-462)||(30768305-30768448)
chr7 (291-462)||(5266217-5266389)
chr7 (291-480)||(29645922-29646112)
chr7 (385-462)||(23390542-23390620)
chr7 (399-462)||(33855658-33855721)
chr7 (291-436)||(7832813-7832959)
chr7 (424-462)||(10903558-10903596)
chr7 (424-462)||(33833942-33833980)
chr7 (421-462)||(4258278-4258319)
chr7 (397-462)||(16565063-16565128)
chr7 (397-462)||(16600534-16600599)
chr7 (423-480)||(24377900-24377957)
chr7 (422-462)||(10903351-10903391)
chr7 (424-459)||(21557008-21557043)
chr7 (423-462)||(31357749-31357788)
chr7 (291-361)||(10903411-10903481)
chr7 (397-462)||(4258074-4258139)
chr7 (424-480)||(38948469-38948525)
chr7 (430-462)||(49040564-49040596)
[»] chr8 (17 HSPs)
chr8 (291-462)||(25186631-25186802)
chr8 (291-460)||(22188793-22188963)
chr8 (291-462)||(8056311-8056483)
chr8 (397-462)||(33435848-33435913)
chr8 (291-472)||(15967880-15968061)
chr8 (397-462)||(45122276-45122341)
chr8 (319-462)||(3895266-3895409)
chr8 (422-462)||(15857169-15857209)
chr8 (422-462)||(43901091-43901131)
chr8 (397-462)||(8559752-8559818)
chr8 (424-462)||(43599303-43599341)
chr8 (425-462)||(8056561-8056598)
chr8 (422-462)||(30065981-30066021)
chr8 (397-464)||(35561630-35561698)
chr8 (399-467)||(37537164-37537232)
chr8 (424-472)||(41456559-41456607)
chr8 (422-462)||(43599508-43599548)
[»] chr3 (19 HSPs)
chr3 (291-462)||(40926561-40926733)
chr3 (291-472)||(19984465-19984648)
chr3 (316-462)||(25578754-25578902)
chr3 (291-462)||(40926888-40927060)
chr3 (316-480)||(32515963-32516125)
chr3 (291-462)||(19984242-19984410)
chr3 (422-462)||(10758842-10758882)
chr3 (424-459)||(12799872-12799907)
chr3 (419-462)||(29369788-29369831)
chr3 (380-462)||(32034243-32034326)
chr3 (397-462)||(9264160-9264226)
chr3 (424-462)||(32034083-32034121)
chr3 (424-462)||(40926446-40926484)
chr3 (421-462)||(26915105-26915146)
chr3 (422-462)||(21832765-21832805)
chr3 (424-464)||(25627993-25628033)
chr3 (424-480)||(39018846-39018902)
chr3 (397-480)||(39268933-39269017)
chr3 (397-464)||(42258874-42258942)
[»] chr2 (14 HSPs)
chr2 (291-462)||(8044620-8044791)
chr2 (352-462)||(10485097-10485208)
chr2 (397-462)||(12432069-12432135)
chr2 (397-462)||(29695413-29695478)
chr2 (397-462)||(33985843-33985908)
chr2 (422-462)||(27545190-27545230)
chr2 (380-458)||(4721882-4721960)
chr2 (397-462)||(883675-883741)
chr2 (424-462)||(3435560-3435598)
chr2 (397-462)||(17727368-17727434)
chr2 (424-462)||(39386662-39386700)
chr2 (441-469)||(10862315-10862343)
chr2 (422-462)||(29676284-29676324)
chr2 (397-460)||(40009938-40010002)
[»] chr6 (6 HSPs)
chr6 (385-459)||(2923033-2923108)
chr6 (397-462)||(24558752-24558818)
chr6 (413-460)||(13692244-13692291)
chr6 (423-462)||(26394542-26394581)
chr6 (413-458)||(30527023-30527068)
chr6 (424-460)||(28149785-28149821)
[»] chr5 (14 HSPs)
chr5 (397-461)||(3763065-3763129)
chr5 (397-460)||(39268191-39268254)
chr5 (408-462)||(37656806-37656860)
chr5 (413-462)||(18107552-18107601)
chr5 (418-462)||(13413776-13413820)
chr5 (399-462)||(4296741-4296804)
chr5 (424-467)||(4563760-4563803)
chr5 (424-462)||(3762898-3762936)
chr5 (396-462)||(11632395-11632461)
chr5 (397-462)||(43490330-43490396)
chr5 (424-460)||(10516344-10516380)
chr5 (422-462)||(20720417-20720457)
chr5 (424-464)||(20720622-20720662)
chr5 (424-480)||(29008064-29008120)


Alignment Details
Target: chr1 (Bit Score: 135; Significance: 4e-70; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 192 - 480
Target Start/End: Complemental strand, 803808 - 803523
Alignment:
Q  192 gattcattcacatgtccatatccacgcgctcacatgttgccttttcatgtaaaaatgtacatcactcatgtacgcgctaatatgatgc-cnnnnnnnnct 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||          ||    
T  803808 gattcattcacatgtccatatccacgcgctcacatgttgccttttcatgtaaaaatatacatcactcatgtacgcgctaatatgatgcttttttttttct 803709  T
Q  291 tttcattatggcatcagagcttcttgaattcaagggtcacctatcgattcacacttcaaatccaaagagtgttgttggacgtaacggttgatttacgcac 390  Q
    ||| ||||||| || ||||| ||||||||||||||||||||||||||| ||| |||||||  |||| |||||||||||     ||||| || | |  |||    
T  803708 ttttattatggtattagagcctcttgaattcaagggtcacctatcgatccacgcttcaaactcaaaaagtgttgttgg-----acggtcgactcaaacac 803614  T
Q  391 caaaatccaaagagttctgggtgtgacggga-tgtattggaaaaaactcatgtcccacatcggatagataagattttttatagtagtttat 480  Q
    ||||| | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||| || |||| |||||||    
T  803613 caaaacctaaagagtgctgggtgtgacgggagtgtattggaaaaaactcatgtcccacatcagatatataagattcttaatagaagtttat 803523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 803975 - 803868
Alignment:
Q  25 ggtgtggtgtggaccttggacatgttggtggggttggaaatgaacagtgttcatcacttagcagtgaatagtcatcactcatcagcaactgcaaatattg 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  803975 ggtgtggtgtggaccttggacatgttggtggggttggaaatgaacagtattcatcacttagcagtgaatagtcatcactcatcagcaactgcaaatattg 803876  T
Q  125 gatggtgc 132  Q
    ||||||||    
T  803875 gatggtgc 803868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 297 - 462
Target Start/End: Complemental strand, 22826984 - 22826819
Alignment:
Q  297 tatggcatcagagcttcttgaattcaagggtcacctatcgattcacacttcaaatccaaagagtgttgttggacgtaacggttgatttacgcaccaaaat 396  Q
    ||||| |||||||| | | || |||||||| |||||| |||||||| |  |||  ||||||||||||||||| ||| |||   ||||  |||||||||      
T  22826984 tatggtatcagagcctatcgatttcaagggccacctaccgattcacgcaccaagcccaaagagtgttgttgggcgtgacgaccgattcgcgcaccaaagc 22826885  T
Q  397 ccaaagagttctgggtgtgacgggatgtattgg-aaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||||  |||| |||||| |  ||||||| ||||||| |||||||||||||||||||||||||    
T  22826884 ccaaagagtgttgggcgtgacgagg-gtattgggaaaaaacccatgtcccacatcggatagataaga 22826819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 462
Target Start/End: Complemental strand, 47086495 - 47086351
Alignment:
Q  319 ttcaagggtcacctatcgattcacacttcaaatccaaagagtgttgttggacgtaacggttgatttacgcaccaaaatccaaagagttctgggtgtgacg 418  Q
    ||||| |||||||||  ||||||| |  |||  |||||||||| || ||| ||| ||||  ||||  |||||||||  |||||||||  |||| ||||||    
T  47086495 ttcaatggtcacctactgattcacgcaccaagcccaaagagtgatgatgggcgtgacggccgattcgcgcaccaaagcccaaagagtgttgggcgtgacg 47086396  T
Q  419 gga-tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||  ||||||||||||||  ||||||||||||| |||||||||||    
T  47086395 ggggtgtattggaaaaaatccatgtcccacatcagatagataaga 47086351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 462
Target Start/End: Original strand, 47377825 - 47377865
Alignment:
Q  422 tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  47377825 tgtattgggaaaaactcatgtcccacatcggatagataaga 47377865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 462
Target Start/End: Complemental strand, 24382707 - 24382642
Alignment:
Q  397 ccaaagagttctgggtgtgacgggatgtattg-gaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||||| ||||| |||| ||||||||||| |||||||| || ||||||||||||||||||||||    
T  24382707 ccaaagagtgctgggcgtgaggggatgtattgagaaaaaac-caagtcccacatcggatagataaga 24382642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 462
Target Start/End: Original strand, 40073172 - 40073338
Alignment:
Q  298 atggcatcagagcttcttgaattcaagggtcacctatcgattcacacttcaaatcc-aaagagtgttgttggacgtaacggttgatttacgcaccaaaat 396  Q
    |||| |||||||| |  ||| |||||||||||| || |||||||| |  |||  || ||||||||||| ||| ||| || |  |||| ||||||||||      
T  40073172 atggtatcagagcctgatgatttcaagggtcacttaccgattcacgcaccaagcccaaaagagtgttgctgggcgtgacagccgattcacgcaccaaagc 40073271  T
Q  397 ccaaagagttctgggtgtgac-gggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||||| ||||  ||||| ||| |||||||| |||||  |||||||||||||||||| ||||||    
T  40073272 ccaaagagtgctggacgtgacgggggtgtattgggaaaaatccatgtcccacatcggatatataaga 40073338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 364
Target Start/End: Original strand, 7171637 - 7171710
Alignment:
Q  291 tttcattatggcatcagagcttcttgaattcaagggtcacctatcgattcacacttcaaatccaaagagtgttg 364  Q
    ||||||||||| |||||||| | | ||||||||||| |||||| |||||||| |  |||| |||||||||||||    
T  7171637 tttcattatggtatcagagcctgtcgaattcaagggccacctaccgattcacgcaccaaacccaaagagtgttg 7171710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 462
Target Start/End: Original strand, 15391990 - 15392055
Alignment:
Q  397 ccaaagagttctgggtgtgacgggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||||  |||| |||| ||| |||||||| |||||| || ||||||||||||||||||||||    
T  15391990 ccaaagagtgttgggcgtgagggggtgtattgggaaaaacccaagtcccacatcggatagataaga 15392055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 480
Target Start/End: Original strand, 30958651 - 30958710
Alignment:
Q  421 atgtattggaaaaaactcatgtcccacatcggatagataagattttttatagtagtttat 480  Q
    ||||||||||||||||  | ||||||||||||||| |||||| |||| ||| ||||||||    
T  30958651 atgtattggaaaaaaccaaagtcccacatcggatatataagacttttgataatagtttat 30958710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 462
Target Start/End: Original strand, 11581747 - 11581785
Alignment:
Q  424 tattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  11581747 tattggaaaaaactcaaatcccacatcggatagataaga 11581785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 460
Target Start/End: Complemental strand, 42844933 - 42844891
Alignment:
Q  418 gggatgtattggaaaaaactcatgtcccacatcggatagataa 460  Q
    |||||||||| ||||||| ||| ||||||||||||||||||||    
T  42844933 gggatgtattagaaaaaattcaagtcccacatcggatagataa 42844891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 460
Target Start/End: Complemental strand, 2997196 - 2997132
Alignment:
Q  397 ccaaagagttctgggtgtgacgg-gatgtattggaaaaaactcatgtcccacatcggatagataa 460  Q
    ||||||||| ||||| ||||||| | |||||||| ||||||  | ||||||||||||||||||||    
T  2997196 ccaaagagtgctgggcgtgacggaggtgtattgggaaaaacctaagtcccacatcggatagataa 2997132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 456
Target Start/End: Complemental strand, 6238088 - 6238041
Alignment:
Q  408 tgggtgtgacgggatgtattggaaaaaactcatgtcccacatcggatag 456  Q
    |||| |||||||| |||||||| |||| |||||||||||||||||||||    
T  6238088 tgggcgtgacggggtgtattgggaaaa-ctcatgtcccacatcggatag 6238041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 462
Target Start/End: Original strand, 49142644 - 49142712
Alignment:
Q  394 aatccaaagagttctgggtgtgacgggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||| ||||||  ||||| ||| ||| |||||||| |||||| || ||||||||| ||||||||||||    
T  49142644 aatcccaagagtgttgggtatgatggggtgtattgggaaaaacccaagtcccacattggatagataaga 49142712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 291 - 462
Target Start/End: Original strand, 14945002 - 14945173
Alignment:
Q  291 tttcattatggcatcagagcttcttgaattcaagggtcacctatcgattcacacttcaaatccaaagagtgttgttggacgtaacggttgatttacgcac 390  Q
    ||||||||||| |||||||| | | |||||||||||||||||| |||||||| |  |||  ||||||||||||| ||| ||| ||||| |||| | ||||    
T  14945002 tttcattatggtatcagagcatgtcgaattcaagggtcacctaccgattcacgcaccaagcccaaagagtgttgatgggcgtgacggtcgattcatgcac 14945101  T
Q  391 caaaatccaaagagttctgggtgtgacgggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||  |||||||||  |||  |||||||| |||||||| |||||| |||||||||||||||||||||||||    
T  14945102 caaagcccaaagagtgttggacgtgacggggtgtattgggaaaaacacatgtcccacatcggatagataaga 14945173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 291 - 462
Target Start/End: Original strand, 3640313 - 3640486
Alignment:
Q  291 tttcattatggcatcagagc-ttcttgaattcaagggtcacctatcgattcacacttcaaatccaaagagtgttgttggacgtaacggttgatttacgca 389  Q
    ||||||||||| |||||||| || | ||||||||||| |||||| |||| ||| |  |||  |||||||||| || ||| ||| ||||  |||| |||||    
T  3640313 tttcattatggtatcagagccttgtcgaattcaagggccacctaccgatccacgcaccaagcccaaagagtgctgctgggcgtgacggccgattcacgca 3640412  T
Q  390 ccaaaatccaaagagttctgggtgtgacggga-tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||  ||||||||| ||||| ||||||||  |||||||| |||||||||| |||||||||||||||||||||    
T  3640413 ccaaagcccaaagagtgctgggcgtgacgggggtgtattgggaaaaactcatctcccacatcggatagataaga 3640486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 316 - 462
Target Start/End: Complemental strand, 40716857 - 40716710
Alignment:
Q  316 gaattcaagggtcacctatcgattcacacttcaaatccaaagagtgttgttggacgtaacggttgatttacgcaccaaaatccaaagagttctgggtgtg 415  Q
    ||||||||||| |||||| |||||||| |   || || |||||||| |||||| ||| ||||  |||| ||||||||||  ||||| |||  |||| |||    
T  40716857 gaattcaagggccacctaccgattcacgcacaaagtctaaagagtgatgttgggcgtgacggccgattcacgcaccaaagcccaaaaagtgttgggcgtg 40716758  T
Q  416 acggga-tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    | |||  |||||||||||||||||| ||||||||||| ||||||||||    
T  40716757 aagggggtgtattggaaaaaactcaagtcccacatcgtatagataaga 40716710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 322 - 480
Target Start/End: Complemental strand, 8305171 - 8305011
Alignment:
Q  322 aagggtcacctatcgattcacacttcaaatccaaagagtgttgttggacgtaacggttgatttacgcaccaaaatcc-aaagagttctgggtgtgacggg 420  Q
    ||||| ||||||||||||||  | ||||  |||||||||| || ||| ||| ||||  |||| ||||||||||| || ||||| |  | || ||||||||    
T  8305171 aagggccacctatcgattcatgcatcaagcccaaagagtgctgctgggcgtgacggccgattcacgcaccaaaagcccaaagactgtttggcgtgacggg 8305072  T
Q  421 a-tgtattggaaaaaactcatgtcccacatcggatagataagattttttatagtagtttat 480  Q
      |||||||| |||||||||||||| ||||||||||||||||| |||| |||  |||||||    
T  8305071 ggtgtattgggaaaaactcatgtcctacatcggatagataagacttttgataagagtttat 8305011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 21206518 - 21206567
Alignment:
Q  291 tttcattatggcatcagagcttcttgaattcaagggtcacctatcgattc 340  Q
    ||||||||||| |||||||| | |||||||||||||||||||||||||||    
T  21206518 tttcattatggtatcagagcctgttgaattcaagggtcacctatcgattc 21206567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 462
Target Start/End: Original strand, 29113413 - 29113479
Alignment:
Q  397 ccaaagagttctgggtgtgacggga-tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||||| ||||| ||||||||  |||||||| |||||| ||||||||||||| |||||||||||    
T  29113413 ccaaagagtgctgggcgtgacgggggtgtattgggaaaaacccatgtcccacatcagatagataaga 29113479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 423 - 480
Target Start/End: Complemental strand, 47491959 - 47491902
Alignment:
Q  423 gtattggaaaaaactcatgtcccacatcggatagataagattttttatagtagtttat 480  Q
    ||||||| |||||| ||||||||||||||||||||||||| | || |||| |||||||    
T  47491959 gtattgggaaaaacccatgtcccacatcggatagataagactcttgataggagtttat 47491902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 462
Target Start/End: Original strand, 39110897 - 39110937
Alignment:
Q  422 tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||| ||||||||| ||||||||||||||||||||||    
T  39110897 tgtattgggaaaaactcaagtcccacatcggatagataaga 39110937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 462
Target Start/End: Original strand, 3640197 - 3640236
Alignment:
Q  423 gtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  3640197 gtattgggaaaaactcatgtcccacgtcggatagataaga 3640236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 480
Target Start/End: Complemental strand, 53720785 - 53720726
Alignment:
Q  421 atgtattggaaaaaactcatgtcccacatcggatagataagattttttatagtagtttat 480  Q
    ||||||||| ||||||| | |||||||||||||||||||||| |||| |||  |||||||    
T  53720785 atgtattgggaaaaactgaagtcccacatcggatagataagacttttgataaaagtttat 53720726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 462
Target Start/End: Complemental strand, 1923131 - 1923065
Alignment:
Q  397 ccaaagagttctgggtgtgacggga-tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||||  |||| ||||||||  |||||||| |||||| ||||||||||||| |||||||||||    
T  1923131 ccaaagagtgttgggcgtgacgggggtgtattgggaaaaacccatgtcccacatcagatagataaga 1923065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 462
Target Start/End: Original strand, 5065845 - 5065883
Alignment:
Q  424 tattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  5065845 tattggaaaaaactcaagtctcacatcggatagataaga 5065883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 462
Target Start/End: Original strand, 39110709 - 39110747
Alignment:
Q  424 tattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  39110709 tattggaaaaaactcaagtctcacatcggatagataaga 39110747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 459
Target Start/End: Complemental strand, 45684293 - 45684251
Alignment:
Q  417 cgggatgtattggaaaaaactcatgtcccacatcggatagata 459  Q
    |||| |||||||| |||||| ||||||||||||||||||||||    
T  45684293 cggggtgtattgggaaaaacccatgtcccacatcggatagata 45684251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 458
Target Start/End: Original strand, 33629828 - 33629889
Alignment:
Q  397 ccaaagagttctgggtgtgacgggatgtattggaaaaaactcatgtcccacatcggatagat 458  Q
    ||||||||| ||||| ||||  || |||||||| |||||| || ||||||||||||||||||    
T  33629828 ccaaagagtgctgggcgtgagtgggtgtattgggaaaaacccaagtcccacatcggatagat 33629889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 368
Target Start/End: Complemental strand, 45684386 - 45684309
Alignment:
Q  291 tttcattatggcatcagagcttcttgaattcaagggtcacctatcgattcacacttcaaatccaaagagtgttgttgg 368  Q
    ||||||||||| |||||||| | | || |||||||| |||||| |||||||| |  |||  |||||||||||||||||    
T  45684386 tttcattatggtatcagagcgtgtcgatttcaagggccacctaccgattcacgcaccaagcccaaagagtgttgttgg 45684309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 319 - 462
Target Start/End: Original strand, 30768305 - 30768448
Alignment:
Q  319 ttcaagggtcacctatcgattcacacttcaaatccaaagagtgttgttggacgtaacggttgatttacgcaccaaaatccaaagagttctgggtgtgacg 418  Q
    |||||||||||| || |||||||| | ||||  ||||||||||| ||||| ||| |||  ||||| ||||||||||  |||||||||  |||| ||||||    
T  30768305 ttcaagggtcacttaccgattcacgcatcaagcccaaagagtgtcgttgggcgtgacgactgattcacgcaccaaagcccaaagagtgttgggcgtgacg 30768404  T
Q  419 ggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    || |||||| | ||||||||||||||||||||||||||||||||    
T  30768405 gggtgtattaggaaaaactcatgtcccacatcggatagataaga 30768448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 291 - 462
Target Start/End: Original strand, 5266217 - 5266389
Alignment:
Q  291 tttcattatggcatcagagcttcttgaattcaagggtcacctatcgattcacacttcaaatccaaagagtgttgttggacgtaacggttgatttacgcac 390  Q
    ||||||| ||| |||||||| | | |||||||||||||||||| |||||||| |   ||  ||||||||||||||||  | | ||||  |||| ||||||    
T  5266217 tttcattctggtatcagagcctgtcgaattcaagggtcacctaccgattcacgcactaagcccaaagagtgttgttgagcatgacggccgattcacgcac 5266316  T
Q  391 caaaatccaaagagttctgggtgtgacggga-tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||  |||||||||  |||| |||| |||  |||||||| |||||| ||||||||||||| |||||||||||    
T  5266317 caaagcccaaagagtgttgggcgtgatgggggtgtattgggaaaaacccatgtcccacatcagatagataaga 5266389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 291 - 480
Target Start/End: Original strand, 29645922 - 29646112
Alignment:
Q  291 tttcattatggcatcagagcttcttgaattcaagggtcacctatcgattcacacttcaaatccaaagagtgttgttggacgtaacggttgatttacgcac 390  Q
    ||||||||||| |||||||  | | ||||||||||| ||||||  |||||||||  |||  ||||||||||||||||||| |  |||  |||| ||||||    
T  29645922 tttcattatggtatcagagtctgtcgaattcaagggccacctactgattcacacaccaagcccaaagagtgttgttggacat-gcggccgattcacgcac 29646020  T
Q  391 caaaa-tccaaagagttctgggtgtgac-gggatgtattggaaaaaactcatgtcccacatcggatagataagattttttatagtagtttat 480  Q
    |||||  |||||||||  ||||  |||| ||| |||||||| ||||| ||||||||||||| |||||||||||| | || |||| |||||||    
T  29646021 caaaagcccaaagagtgttgggcatgacgggggtgtattgggaaaaattcatgtcccacattggatagataagactcttgataggagtttat 29646112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 462
Target Start/End: Original strand, 23390542 - 23390620
Alignment:
Q  385 acgcaccaaaatccaaagagttctgggtgtgacggga-tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||||||  |||||||||  |||| ||||||||  |||||||| |||||| |||||||||||||||||||||||||    
T  23390542 acgcaccaaagcccaaagagtgttgggcgtgacgggggtgtattgggaaaaacccatgtcccacatcggatagataaga 23390620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 462
Target Start/End: Original strand, 33855658 - 33855721
Alignment:
Q  399 aaagagttctgggtgtgacgggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||  ||||||||| ||| |||||||| |||||| || ||||||||||||||||||||||    
T  33855658 aaagagtgatgggtgtgagggggtgtattgggaaaaacccaagtcccacatcggatagataaga 33855721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 436
Target Start/End: Complemental strand, 7832959 - 7832813
Alignment:
Q  291 tttcattatggcatcagagcttcttgaattcaagggtcacctatcgattcacacttcaaatccaaagagtgttgttggacgtaacggttgatttacgcac 390  Q
    ||||||||||| |||||||| | | ||||||||||||| |||| |||||||| | ||||  |||||||| | |||||| ||| ||||   ||| || |||    
T  7832959 tttcattatggtatcagagcctgtcgaattcaagggtcccctaccgattcacgcatcaagcccaaagagcgctgttgggcgtgacggccaattcacacac 7832860  T
Q  391 caaaatccaaagagttctgggtgtgac-gggatgtattggaaaaaac 436  Q
    ||||   |||||||| || || ||||| ||| |||||||||||||||    
T  7832859 caaagcgcaaagagtgctcggcgtgacgggggtgtattggaaaaaac 7832813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 462
Target Start/End: Complemental strand, 10903596 - 10903558
Alignment:
Q  424 tattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  10903596 tattgggaaaaactcatgtcccacatcggatagataaga 10903558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 462
Target Start/End: Original strand, 33833942 - 33833980
Alignment:
Q  424 tattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  33833942 tattggaaaaaacccatgtcccacatcggatagataaga 33833980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 421 - 462
Target Start/End: Complemental strand, 4258319 - 4258278
Alignment:
Q  421 atgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||||| ||||||||| ||||||||||||||||||||||    
T  4258319 atgtattgggaaaaactcaagtcccacatcggatagataaga 4258278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 462
Target Start/End: Original strand, 16565063 - 16565128
Alignment:
Q  397 ccaaagagttctgggtgtgacgggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||||  |||| |||| ||| |||||||| |||||| || ||||||||||||||||||||||    
T  16565063 ccaaagagtgttgggcgtgagggggtgtattgggaaaaacccaagtcccacatcggatagataaga 16565128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 462
Target Start/End: Complemental strand, 16600599 - 16600534
Alignment:
Q  397 ccaaagagttctgggtgtgacgggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||||  |||| |||| ||| |||||||| |||||| || ||||||||||||||||||||||    
T  16600599 ccaaagagtgttgggcgtgagggggtgtattgggaaaaacccaagtcccacatcggatagataaga 16600534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 423 - 480
Target Start/End: Complemental strand, 24377957 - 24377900
Alignment:
Q  423 gtattggaaaaaactcatgtcccacatcggatagataagattttttatagtagtttat 480  Q
    ||||||| ||||||||||||||| |||||||||||||| | |||| |||| |||||||    
T  24377957 gtattgggaaaaactcatgtcccgcatcggatagataaaacttttgataggagtttat 24377900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 462
Target Start/End: Complemental strand, 10903391 - 10903351
Alignment:
Q  422 tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  10903391 tgtattgggaaaaacacatgtcccacatcggatagataaga 10903351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 459
Target Start/End: Original strand, 21557008 - 21557043
Alignment:
Q  424 tattggaaaaaactcatgtcccacatcggatagata 459  Q
    |||||||||||||||| |||||||||||||||||||    
T  21557008 tattggaaaaaactcaagtcccacatcggatagata 21557043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 462
Target Start/End: Complemental strand, 31357788 - 31357749
Alignment:
Q  423 gtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  31357788 gtattgggaaaaacccatgtcccacatcggatagataaga 31357749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 10903481 - 10903411
Alignment:
Q  291 tttcattatggcatcagagcttcttgaattcaagggtcacctatcgattcacacttcaaatccaaagagtg 361  Q
    ||||||||||| |||| ||| | ||||||||||||| |||||| |||||||| | ||||  ||||||||||    
T  10903481 tttcattatggtatcaaagcctgttgaattcaagggccacctaccgattcacgcatcaagcccaaagagtg 10903411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 462
Target Start/End: Complemental strand, 4258139 - 4258074
Alignment:
Q  397 ccaaagagttctgggtgtgacgggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||||  |||| |||| ||| |||||||| |||||| || ||| ||||||||||||||||||    
T  4258139 ccaaagagtgttgggcgtgagggggtgtattgggaaaaacccaagtctcacatcggatagataaga 4258074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 480
Target Start/End: Complemental strand, 38948525 - 38948469
Alignment:
Q  424 tattggaaaaaactcatgtcccacatcggatagataagattttttatagtagtttat 480  Q
    |||||| ||||| ||||||||||||||||| |||||||| | ||||||  |||||||    
T  38948525 tattgggaaaaaatcatgtcccacatcggaaagataagactctttataagagtttat 38948469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 462
Target Start/End: Original strand, 49040564 - 49040596
Alignment:
Q  430 aaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||||||||| ||||||||||||||||||    
T  49040564 aaaaaactcatgtctcacatcggatagataaga 49040596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 291 - 462
Target Start/End: Original strand, 25186631 - 25186802
Alignment:
Q  291 tttcattatggcatcagagcttcttgaattcaagggtcacctatcgattcacacttcaaatccaaagagtgttgttggacgtaacggttgatttacgcac 390  Q
    ||||||||||| |||||||| | | ||||||||||||||||||  ||||||| |  |||  |||||||||| |||||| ||| ||||  |||| | |||     
T  25186631 tttcattatggtatcagagcctgtcgaattcaagggtcacctactgattcacgcaccaagcccaaagagtgctgttgggcgtgacggccgattcaggcat 25186730  T
Q  391 caaaatccaaagagttctgggtgtgacgggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||  ||||||||| ||||| |||||||  |||||||||||||||  | ||||||||||||||||||||||    
T  25186731 caaagcccaaagagtgctgggcgtgacggagtgtattggaaaaaacctaagtcccacatcggatagataaga 25186802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 291 - 460
Target Start/End: Original strand, 22188793 - 22188963
Alignment:
Q  291 tttcattatggcatcagagcttcttgaattcaagggtcacctatcgattcacacttcaaatccaaagagtgttgttggacgtaacggttgatttacgcac 390  Q
    ||||||||||| |||||||  | | || ||||||||| | ||| |||||||| |  |||  |||||||||| || ||| ||| |||| ||||| || |||    
T  22188793 tttcattatggtatcagagtctgtcgatttcaagggtaatctaccgattcacgcaccaagcccaaagagtgctgctgggcgtgacggctgattcacacac 22188892  T
Q  391 caaaatccaaagagttctgggtgtgacg-ggatgtattggaaaaaactcatgtcccacatcggatagataa 460  Q
    ||||  ||||||||| ||||| |||||  || |||||||| ||||||||||||||||||||||||||||||    
T  22188893 caaagcccaaagagtgctgggcgtgacatgggtgtattgggaaaaactcatgtcccacatcggatagataa 22188963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 291 - 462
Target Start/End: Complemental strand, 8056483 - 8056311
Alignment:
Q  291 tttcattatggcatcagagcttcttgaattcaagggtcacctatcgattcacacttcaaatccaaagagtgttgttggacgtaacggttgatttacgcac 390  Q
    |||| |||||| |||||||| | | ||||||||||| ||||||||||||||| |  |||| |||||||| | || ||| ||| || |  |||| || |||    
T  8056483 tttctttatggtatcagagcctgtcgaattcaagggccacctatcgattcactcaccaaacccaaagagcgctgctgggcgtgacagccgattcacacac 8056384  T
Q  391 caaaatccaaagagttctgggtgtgac-gggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||  ||||||||| ||||| ||||| | | ||| |||  |||||| |||||||||||||||| ||||||||    
T  8056383 caaagcccaaagagtgctgggcgtgacagaggtgtgttgagaaaaacccatgtcccacatcggaaagataaga 8056311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 462
Target Start/End: Original strand, 33435848 - 33435913
Alignment:
Q  397 ccaaagagttctgggtgtgacgggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||||| || ||||||| ||| |||||||| |||||| || ||||||||||||||||||||||    
T  33435848 ccaaagagtgctaggtgtgagggggtgtattgggaaaaacccaagtcccacatcggatagataaga 33435913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 472
Target Start/End: Complemental strand, 15968061 - 15967880
Alignment:
Q  291 tttcattatggcatcagagcttcttgaattcaagggtcacctatcgattcacacttcaaatccaaagagtgttgttggacgtaacggttgatttacgcac 390  Q
    ||||||||||| |||||||| | | || |||||||| |||||| ||||||||||  |||  |||| ||||| || || |||| ||    |||| | ||||    
T  15968061 tttcattatggtatcagagcctgtcgatttcaagggccacctaccgattcacacaccaagcccaacgagtgctgctg-acgtgacaaccgattcatgcac 15967963  T
Q  391 caaaatccaaagagttctgggtgtgacgg-gatgtattggaaaaaactcatgtcccacatcggatagataagattttttatag 472  Q
    ||||  ||||||||| ||||| | ||| | | || ||||| |||||| ||||||||||||||||||||||||| ||| |||||    
T  15967962 caaagcccaaagagtgctgggcgcgaccgaggtggattgggaaaaacccatgtcccacatcggatagataagaatttatatag 15967880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 462
Target Start/End: Original strand, 45122276 - 45122341
Alignment:
Q  397 ccaaagagttctgggtgtgacgggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||||  ||||||||| ||| |||||||| |||||| || |||||||||| |||||||||||    
T  45122276 ccaaagagtgttgggtgtgagggggtgtattgggaaaaacccaagtcccacatctgatagataaga 45122341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 462
Target Start/End: Original strand, 3895266 - 3895409
Alignment:
Q  319 ttcaagggtcacctatcgattcacacttcaaatccaaagagtgttgttggacgtaacggttgatttacgcaccaaaatccaaagagttctgggtgtgacg 418  Q
    |||||||| |||| | |||||||| |  |||  |||||||||| || ||| ||| ||||  |||| ||||||||||  |||||||||  |||  ||||||    
T  3895266 ttcaagggccaccaaccgattcacgcaccaagcccaaagagtgctgctgggcgtgacggccgattcacgcaccaaagcccaaagagtgttggtcgtgacg 3895365  T
Q  419 gga-tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||  ||||||||||||||| ||||| | |||||||||||||||||    
T  3895366 ggggtgtattggaaaaaacccatgt-ctacatcggatagataaga 3895409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 462
Target Start/End: Original strand, 15857169 - 15857209
Alignment:
Q  422 tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||| ||||||||| ||||||||||||||||||||||    
T  15857169 tgtattgggaaaaactcaagtcccacatcggatagataaga 15857209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 462
Target Start/End: Complemental strand, 43901131 - 43901091
Alignment:
Q  422 tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  43901131 tgtattgggaaaaacccatgtcccacatcggatagataaga 43901091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 462
Target Start/End: Complemental strand, 8559818 - 8559752
Alignment:
Q  397 ccaaagagttctgggtgtgacggga-tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||||| ||||| |||| |||  |||||||| |||||| || ||||||||||||||||||||||    
T  8559818 ccaaagagtgctgggcgtgaggggggtgtattgggaaaaacccaagtcccacatcggatagataaga 8559752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 462
Target Start/End: Original strand, 43599303 - 43599341
Alignment:
Q  424 tattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  43599303 tattgggaaaaactcaagtcccacatcggatagataaga 43599341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 462
Target Start/End: Complemental strand, 8056598 - 8056561
Alignment:
Q  425 attggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  8056598 attggaaaaaacacatgtcccacatcagatagataaga 8056561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 462
Target Start/End: Original strand, 30065981 - 30066021
Alignment:
Q  422 tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||| ||||||||| |||||||||| |||||||||||    
T  30065981 tgtattgggaaaaactcaagtcccacatcagatagataaga 30066021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 464
Target Start/End: Original strand, 35561630 - 35561698
Alignment:
Q  397 ccaaagagttctgggtgtgacggga-tgtattggaaaaaactcatgtcccacatcggatagataagatt 464  Q
    ||||||||| ||||| |||| |||  ||| |||| |||||| || ||||||||||||||||||||||||    
T  35561630 ccaaagagtgctgggcgtgaggggggtgtgttgggaaaaacccaagtcccacatcggatagataagatt 35561698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 467
Target Start/End: Complemental strand, 37537232 - 37537164
Alignment:
Q  399 aaagagttctgggtgtgacgggatgtattggaaaaaactcatgtcccacatcggatagataagattttt 467  Q
    ||||||| || || |||| ||| || ||||| ||||||||| ||||||||||| |||||||||| ||||    
T  37537232 aaagagtgctaggcgtgagggggtgaattgggaaaaactcaagtcccacatcgaatagataagactttt 37537164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 472
Target Start/End: Complemental strand, 41456607 - 41456559
Alignment:
Q  424 tattggaaaaaactcatgtcccacatcggatagataagattttttatag 472  Q
    |||||| |||||||||||||||||||  ||||||||||| ||| |||||    
T  41456607 tattgggaaaaactcatgtcccacattagatagataagagtttatatag 41456559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 462
Target Start/End: Original strand, 43599508 - 43599548
Alignment:
Q  422 tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||| |||||| || ||||||||||||||||||||||    
T  43599508 tgtattgggaaaaacccaagtcccacatcggatagataaga 43599548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 291 - 462
Target Start/End: Original strand, 40926561 - 40926733
Alignment:
Q  291 tttcattatggcatcagagcttcttgaattcaagggtcacctatcgattcacacttcaaatccaaagagtgttgttggacgtaacggttgatttacgcac 390  Q
    ||||||||||| || ||||| | | || ||||||||||||||| |||||||| |  ||| ||||||||||| || ||| ||| ||||  |||| ||||||    
T  40926561 tttcattatggtattagagcctgtcgatttcaagggtcacctaccgattcacgcaccaagtccaaagagtgctgctgggcgtgacggccgattcacgcac 40926660  T
Q  391 caaaatccaaagagttctgggtgtgac-gggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||  ||||||||  |||| ||||| ||| ||||||||||||||   ||||||||||||||||||||||||    
T  40926661 caaaacacaaagagtgatgggcgtgacagggttgtattggaaaaaatcaatgtcccacatcggatagataaga 40926733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 291 - 472
Target Start/End: Complemental strand, 19984648 - 19984465
Alignment:
Q  291 tttcattatggcatcagagcttcttgaattcaagggtcacctatcgattcacacttcaaatccaaagagtgttgttggacgtaacggttgatttacgcac 390  Q
    ||||||||||| |||||||| | | ||  ||||||| |||||| |||||||| |  |||   ||||||| | || ||| ||| ||||  |||| ||||||    
T  19984648 tttcattatggtatcagagcctgtcgatatcaagggccacctaccgattcacgcaccaagctcaaagagcgctgctgggcgtgacgggcgattcacgcac 19984549  T
Q  391 caaaatcc-aaagagttctgggtgtgacggga-tgtattggaaaaaactcatgtcccacatcggatagataagattttttatag 472  Q
    ||||| || ||||||| ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||| ||| |||||    
T  19984548 caaaagcccaaagagtgctgggtgtgacgggggtgtattgggaaaaactcatgtcccacatcggatagataagagtttatatag 19984465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 316 - 462
Target Start/End: Complemental strand, 25578902 - 25578754
Alignment:
Q  316 gaattcaagggtcacctatcgattcacacttcaaatccaaagagtgttgttggacgtaacggttgatttacgcaccaaaatccaaagagttctgggtgtg 415  Q
    |||||||||||||||||| |||||||| |   ||  ||||||||||||| ||| |||  |||  |||| ||||||||||  ||||| |||  | || |||    
T  25578902 gaattcaagggtcacctaccgattcacgcactaagcccaaagagtgttgctgggcgtgtcggccgattcacgcaccaaagcccaaaaagtgttcggcgtg 25578803  T
Q  416 acggg--atgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||  ||||||||| |||||| |||||||||||||||||||||||||    
T  25578802 acgggggatgtattgggaaaaacccatgtcccacatcggatagataaga 25578754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 462
Target Start/End: Original strand, 40926888 - 40927060
Alignment:
Q  291 tttcattatggcatcagagcttcttgaattcaagggtcacctatcgattcacacttcaaatccaaagagtgttgttggacgtaacggttgatttacgcac 390  Q
    ||||||||||| |||||||| | | || |||||||| |||||| |||| ||| |  |||  ||||||||||||| ||| ||| ||||  |||| ||||||    
T  40926888 tttcattatggtatcagagcctgtcgatttcaagggccacctaccgatccacgcaccaagcccaaagagtgttgctgggcgtgacggccgattcacgcac 40926987  T
Q  391 caaaatccaaagagttctgggtgtgac-gggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||  |||||||||  ||||  |||| ||| ||||| || |||||  |||||||||||||||||||||||||    
T  40926988 caaagcccaaagagtgatgggcttgacggggttgtatcgggaaaaatccatgtcccacatcggatagataaga 40927060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 480
Target Start/End: Complemental strand, 32516125 - 32515963
Alignment:
Q  316 gaattcaagggtcacctatcgattcacacttcaaatccaaagagtgttgttggacgtaacggttgatttacgcaccaaaatccaaagagttctgggtgtg 415  Q
    |||||||||||||||||| |||||||| |  |||  |||||||||| || ||| | |   ||  |||| ||||||||||  ||||||||| |||||||||    
T  32516125 gaattcaagggtcacctaccgattcacgcaccaagcccaaagagtgctgctgggcatg--ggccgattcacgcaccaaagcccaaagagtgctgggtgtg 32516028  T
Q  416 acggg-atgtattggaaaaaactcatgtcccacatcggatagataagattttttatagtagtttat 480  Q
    |||||  ||||| ||  ||||||||||||||||||||||||||||||| | || |||| |||||||    
T  32516027 acgggtgtgtatagg-gaaaactcatgtcccacatcggatagataagactcttgataggagtttat 32515963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 462
Target Start/End: Complemental strand, 19984410 - 19984242
Alignment:
Q  291 tttcattatggcatcagagcttcttgaattcaagggtcacctatcgattcacacttcaaatccaaagagtgttgttggacgtaacggttgatttacgcac 390  Q
    ||||||||||| |||||||| | | || |||||||||||| || |||||||| |  |||  |||||||| |||| ||| ||| ||||  |||| ||||||    
T  19984410 tttcattatggtatcagagcctgtcgatttcaagggtcacttaccgattcacgcaccaagcccaaagagcgttgctgggcgtgacggccgattcacgcac 19984311  T
Q  391 caaaatccaaagagttctgggtgtgac-gggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||  |||||||||  ||||  |||| ||| |||||||| ||||    ||||||||||||||||||||||||    
T  19984310 caaagcccaaagagtgttgggcatgacgggggtgtattgggaaaa----atgtcccacatcggatagataaga 19984242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 462
Target Start/End: Complemental strand, 10758882 - 10758842
Alignment:
Q  422 tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  10758882 tgtattggaaaaaactcaagtcccacatcggatagataaga 10758842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 459
Target Start/End: Original strand, 12799872 - 12799907
Alignment:
Q  424 tattggaaaaaactcatgtcccacatcggatagata 459  Q
    |||||||||||||||| |||||||||||||||||||    
T  12799872 tattggaaaaaactcaagtcccacatcggatagata 12799907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 462
Target Start/End: Original strand, 29369788 - 29369831
Alignment:
Q  419 ggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||||||| |||||| || ||||||||||||||||||||||    
T  29369788 ggatgtattgggaaaaacccaagtcccacatcggatagataaga 29369831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 462
Target Start/End: Original strand, 32034243 - 32034326
Alignment:
Q  380 gatttacgcaccaaaatccaaagagttctgggtgtgacggga-tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||| ||||||| ||  ||||||||| ||||| ||||||||  |||||| | ||||||  ||||||||||||||||||||||||    
T  32034243 gattcacgcaccgaagcccaaagagtgctgggcgtgacgggggtgtattaggaaaaacctatgtcccacatcggatagataaga 32034326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 462
Target Start/End: Complemental strand, 9264226 - 9264160
Alignment:
Q  397 ccaaagagttctgggtgtgacggga-tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||||| ||||| |||| |||  |||||||| |||||| || ||||||||||||||||||||||    
T  9264226 ccaaagagtgctgggcgtgaggggggtgtattgggaaaaacccaagtcccacatcggatagataaga 9264160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 462
Target Start/End: Original strand, 32034083 - 32034121
Alignment:
Q  424 tattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  32034083 tattgggaaaaactcatgtcccacatcgaatagataaga 32034121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 462
Target Start/End: Original strand, 40926446 - 40926484
Alignment:
Q  424 tattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  40926446 tattgggaaaaacacatgtcccacatcggatagataaga 40926484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 462
Target Start/End: Original strand, 26915105 - 26915146
Alignment:
Q  421 atgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||||||||||||||| |||||| ||| |||||||||||    
T  26915105 atgtattggaaaaaactcaagtcccagatcagatagataaga 26915146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 462
Target Start/End: Complemental strand, 21832805 - 21832765
Alignment:
Q  422 tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||||||||| |||| ||||||||||||||||| ||||    
T  21832805 tgtattggaaaaatctcaagtcccacatcggatagacaaga 21832765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 464
Target Start/End: Complemental strand, 25628033 - 25627993
Alignment:
Q  424 tattggaaaaaactcatgtcccacatcggatagataagatt 464  Q
    |||||| |||||| || ||||||||||||||||||||||||    
T  25628033 tattgggaaaaacccaagtcccacatcggatagataagatt 25627993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 480
Target Start/End: Complemental strand, 39018902 - 39018846
Alignment:
Q  424 tattggaaaaaactcatgtcccacatcggatagataagattttttatagtagtttat 480  Q
    |||||| |||||||  ||||||||||||||||||||||| | || |||| |||||||    
T  39018902 tattgggaaaaacttttgtcccacatcggatagataagactcttgataggagtttat 39018846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 480
Target Start/End: Complemental strand, 39269017 - 39268933
Alignment:
Q  397 ccaaagagttctgggtgtgacgg-gatgtattggaaaaaactcatgtcccacatcggatagataagattttttatagtagtttat 480  Q
    |||||||||  |||| ||||||| | ||||||| |||||||  |||||| ||||||||||||||||| | || |||| |||||||    
T  39269017 ccaaagagtgttgggcgtgacggaggtgtattgaaaaaaacctatgtcctacatcggatagataagactattgataggagtttat 39268933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 464
Target Start/End: Original strand, 42258874 - 42258942
Alignment:
Q  397 ccaaagagttctgggtgtgacggga-tgtattggaaaaaactcatgtcccacatcggatagataagatt 464  Q
    ||||||||| ||||| |||| |||  |||||||| |||||  || ||||||||||||||||||||||||    
T  42258874 ccaaagagtgctgggcgtgatgggggtgtattgggaaaaatccaagtcccacatcggatagataagatt 42258942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 462
Target Start/End: Complemental strand, 8044791 - 8044620
Alignment:
Q  291 tttcattatggcatcagagcttcttgaattcaagggtcacctatcgattcacacttcaaatccaaagagtgttgttggacgtaacggttgatttacgcac 390  Q
    ||||||||||| ||||||| || | ||||||||||| |||||| |||||||||   |||  |||||||||| || ||| ||| || |  |||| | ||||    
T  8044791 tttcattatggtatcagagtttgtcgaattcaagggccacctaccgattcacaaaccaagcccaaagagtgatgctgggcgtgacagccgattcatgcac 8044692  T
Q  391 caaaatccaaagagttctgggtgtgacgggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||  ||||||||| |||||||||| ||| |||||||| |||||| || ||||| |||| |||||||||||    
T  8044691 caaagcccaaagagtgctgggtgtgagggggtgtattgggaaaaacccaagtcccgcatcagatagataaga 8044620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 352 - 462
Target Start/End: Original strand, 10485097 - 10485208
Alignment:
Q  352 ccaaagagtgttgttggacgtaacggttgatttacgcaccaaaatccaaagagttctgggtgtgac-gggatgtattggaaaaaactcatgtcccacatc 450  Q
    ||||||||||||| ||| ||| ||||  |||| ||||||||||  ||||||||| ||||| ||||| ||| |||||||| |||||  |||||||||||||    
T  10485097 ccaaagagtgttgctgggcgtgacggccgattcacgcaccaaagcccaaagagtgctgggcgtgacaggggtgtattgggaaaaatccatgtcccacatc 10485196  T
Q  451 ggatagataaga 462  Q
    ||||||||||||    
T  10485197 ggatagataaga 10485208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 462
Target Start/End: Original strand, 12432069 - 12432135
Alignment:
Q  397 ccaaagagttctgggtgtga-cgggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||||| ||||| |||| |||| ||||||||||||||  || ||||||||||||||||||||||    
T  12432069 ccaaagagtgctgggcgtgagcggggtgtattggaaaaaatccaagtcccacatcggatagataaga 12432135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 462
Target Start/End: Complemental strand, 29695478 - 29695413
Alignment:
Q  397 ccaaagagttctgggtgtgacgggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||||| ||||| |||| ||| |||||||| |||||| || ||| ||||||||||||||||||    
T  29695478 ccaaagagtgctgggcgtgagggggtgtattgggaaaaacccaagtctcacatcggatagataaga 29695413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 462
Target Start/End: Complemental strand, 33985908 - 33985843
Alignment:
Q  397 ccaaagagttctgggtgtgacgggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||||  |||| |||| ||| |||||||| |||||| || ||||||||||||||||||||||    
T  33985908 ccaaagagtgttgggcgtgaaggggtgtattggcaaaaacccaagtcccacatcggatagataaga 33985843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 462
Target Start/End: Complemental strand, 27545230 - 27545190
Alignment:
Q  422 tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  27545230 tgtattggaaaaaatccatgtcccacatcggatagataaga 27545190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 458
Target Start/End: Complemental strand, 4721960 - 4721882
Alignment:
Q  380 gatttacgcaccaaaatccaaagagttctgggtgtgac-gggatgtattggaaaaaactcatgtcccacatcggatagat 458  Q
    |||| |||| |||||  ||||||| | ||||||||||| ||| ||||||||||||| | |||||||||||||||||||||    
T  4721960 gattcacgctccaaagcccaaagaatgctgggtgtgaccggggtgtattggaaaaacc-catgtcccacatcggatagat 4721882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 462
Target Start/End: Complemental strand, 883741 - 883675
Alignment:
Q  397 ccaaagagttctgggtgtgacggga-tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||||| ||||| |||| |||  |||||||| |||||| || ||||||||||||||||||||||    
T  883741 ccaaagagtgctgggcgtgaggggggtgtattgggaaaaacccaagtcccacatcggatagataaga 883675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 462
Target Start/End: Complemental strand, 3435598 - 3435560
Alignment:
Q  424 tattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  3435598 tattggaaaaaattcaagtcccacatcggatagataaga 3435560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 462
Target Start/End: Original strand, 17727368 - 17727434
Alignment:
Q  397 ccaaagagttctgggtgtgacggga-tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||||| ||||| |||| |||  |||||||| |||||| || ||||||||||||||||||||||    
T  17727368 ccaaagagtgctgggcgtgaggggggtgtattgggaaaaacccaagtcccacatcggatagataaga 17727434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 462
Target Start/End: Original strand, 39386662 - 39386700
Alignment:
Q  424 tattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  39386662 tattgggaaaaacccatgtcccacatcggatagataaga 39386700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 469
Target Start/End: Original strand, 10862315 - 10862343
Alignment:
Q  441 gtcccacatcggatagataagatttttta 469  Q
    |||||||||||||||||||||||||||||    
T  10862315 gtcccacatcggatagataagatttttta 10862343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 462
Target Start/End: Original strand, 29676284 - 29676324
Alignment:
Q  422 tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||| |||||| |||||| ||||||||||||||||||    
T  29676284 tgtattgggaaaaacacatgtctcacatcggatagataaga 29676324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 460
Target Start/End: Original strand, 40009938 - 40010002
Alignment:
Q  397 ccaaagagttctgggtgtgacggga-tgtattggaaaaaactcatgtcccacatcggatagataa 460  Q
    ||||||||| ||||| |||| |||  |||||||| |||||| || ||||||||||||||||||||    
T  40009938 ccaaagagtgctgggcgtgaggggggtgtattgggaaaaacccaagtcccacatcggatagataa 40010002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 459
Target Start/End: Complemental strand, 2923108 - 2923033
Alignment:
Q  385 acgcaccaaaatccaaagagttctgggtgtgacggga-tgtattggaaaaaactcatgtcccacatcggatagata 459  Q
    ||||||||||  ||||||||| ||||| ||||||||  |||||||| ||||||||||||||||| |||||||||||    
T  2923108 acgcaccaaagcccaaagagtgctgggcgtgacgggggtgtattgggaaaaactcatgtcccacgtcggatagata 2923033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 462
Target Start/End: Original strand, 24558752 - 24558818
Alignment:
Q  397 ccaaagagttctgggtgtgacggga-tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||||| ||||| ||||||||  |||||||||||||||  ||||| ||||||||||||||||||    
T  24558752 ccaaagagtgctgggcgtgacgggggtgtattggaaaaaacctatgtctcacatcggatagataaga 24558818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 460
Target Start/End: Complemental strand, 13692291 - 13692244
Alignment:
Q  413 gtgacgggatgtattggaaaaaactcatgtcccacatcggatagataa 460  Q
    |||||||| |||||||| ||||||||| ||| ||||||||||||||||    
T  13692291 gtgacggggtgtattgggaaaaactcaagtctcacatcggatagataa 13692244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 462
Target Start/End: Original strand, 26394542 - 26394581
Alignment:
Q  423 gtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  26394542 gtattgggaaaaactcatgttccacatcggatagataaga 26394581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 458
Target Start/End: Original strand, 30527023 - 30527068
Alignment:
Q  413 gtgacgggatgtattggaaaaaactcatgtcccacatcggatagat 458  Q
    |||| ||| ||||||||||| |||||| ||||||||||||||||||    
T  30527023 gtgagggggtgtattggaaacaactcaagtcccacatcggatagat 30527068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 460
Target Start/End: Original strand, 28149785 - 28149821
Alignment:
Q  424 tattggaaaaaactcatgtcccacatcggatagataa 460  Q
    |||||| |||||| |||||||||||||||||||||||    
T  28149785 tattgggaaaaacccatgtcccacatcggatagataa 28149821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 461
Target Start/End: Original strand, 3763065 - 3763129
Alignment:
Q  397 ccaaagagttctgggtgtgacgggatgtattggaaaaaactcatgtcccacatcggatagataag 461  Q
    |||||||||  |||| |||||| | |||||||| |||||| ||||||||||||||||||||||||    
T  3763065 ccaaagagtgatgggcgtgacgaggtgtattgggaaaaacccatgtcccacatcggatagataag 3763129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 397 - 460
Target Start/End: Original strand, 39268191 - 39268254
Alignment:
Q  397 ccaaagagttctgggtgtgacgggatgtattggaaaaaactcatgtcccacatcggatagataa 460  Q
    ||||||||| ||||| |||| ||| |||||||| |||||| || ||||||||||||||||||||    
T  39268191 ccaaagagtgctgggcgtgagggggtgtattgggaaaaacccaagtcccacatcggatagataa 39268254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 462
Target Start/End: Complemental strand, 37656860 - 37656806
Alignment:
Q  408 tgggtgtgacgggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||| |||| ||| |||||||||||||||||| ||| ||||||||||||||||||    
T  37656860 tgggcgtgagggggtgtattggaaaaaactcaagtctcacatcggatagataaga 37656806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 18107601 - 18107552
Alignment:
Q  413 gtgacgggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||| |||||||| |||||| || ||||||||||||||||||||||    
T  18107601 gtgacggggtgtattgggaaaaacccaagtcccacatcggatagataaga 18107552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 462
Target Start/End: Original strand, 13413776 - 13413820
Alignment:
Q  418 gggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||||||| |||||| || ||||||||||||||||||||||    
T  13413776 gggatgtattgggaaaaacccaagtcccacatcggatagataaga 13413820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 462
Target Start/End: Complemental strand, 4296804 - 4296741
Alignment:
Q  399 aaagagttctgggtgtgacgggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||| |||||||||| ||| ||||||||||||||| || ||| ||| | ||||||||||||    
T  4296804 aaagagtgctgggtgtgagggggtgtattggaaaaaacccaagtctcaccttggatagataaga 4296741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 467
Target Start/End: Complemental strand, 4563803 - 4563760
Alignment:
Q  424 tattggaaaaaactcatgtcccacatcggatagataagattttt 467  Q
    |||||| ||||||||||||| |||||||||||||||||| ||||    
T  4563803 tattgggaaaaactcatgtctcacatcggatagataagactttt 4563760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 462
Target Start/End: Original strand, 3762898 - 3762936
Alignment:
Q  424 tattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  3762898 tattgggaaaaacccatgtcccacatcggatagataaga 3762936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 462
Target Start/End: Original strand, 11632395 - 11632461
Alignment:
Q  396 tccaaagagttctgggtgtgacgggatgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||||||  |||| |||| ||| ||||||||||||||  || ||||||||||||||||| ||||    
T  11632395 tccaaagagtgttgggcgtgagggggtgtattggaaaaaatccaagtcccacatcggatagacaaga 11632461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 462
Target Start/End: Complemental strand, 43490396 - 43490330
Alignment:
Q  397 ccaaagagttctgggtgtgacggga-tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    ||||||||| ||||| |||| |||  |||||||| |||||| || ||||||||||||||||||||||    
T  43490396 ccaaagagtgctgggcgtgaggggggtgtattgggaaaaacccaagtcccacatcggatagataaga 43490330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 460
Target Start/End: Complemental strand, 10516380 - 10516344
Alignment:
Q  424 tattggaaaaaactcatgtcccacatcggatagataa 460  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  10516380 tattgggaaaaactcaagtcccacatcggatagataa 10516344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 462
Target Start/End: Complemental strand, 20720457 - 20720417
Alignment:
Q  422 tgtattggaaaaaactcatgtcccacatcggatagataaga 462  Q
    |||||||||||||| ||| ||||||||| ||||||||||||    
T  20720457 tgtattggaaaaaattcaagtcccacataggatagataaga 20720417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 464
Target Start/End: Complemental strand, 20720662 - 20720622
Alignment:
Q  424 tattggaaaaaactcatgtcccacatcggatagataagatt 464  Q
    |||||| ||||||||| |||||||||| |||||||||||||    
T  20720662 tattgggaaaaactcaagtcccacatcagatagataagatt 20720622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 480
Target Start/End: Original strand, 29008064 - 29008120
Alignment:
Q  424 tattggaaaaaactcatgtcccacatcggatagataagattttttatagtagtttat 480  Q
    |||||| |||||| ||||| ||||||||||||||||||| | || |||| |||||||    
T  29008064 tattgggaaaaacccatgttccacatcggatagataagactcttgataggagtttat 29008120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University