View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21186_high_2 (Length: 242)

Name: NF21186_high_2
Description: NF21186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21186_high_2
NF21186_high_2
[»] chr1 (3 HSPs)
chr1 (8-96)||(50968202-50968290)
chr1 (150-242)||(50968344-50968438)
chr1 (16-53)||(50970238-50970275)
[»] chr3 (1 HSPs)
chr3 (188-229)||(22240745-22240786)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 50968202 - 50968290
Alignment:
Q  8 cgaagaatattgaagatgattttcttatagattacatgatttagaagatgatatcgctgaaaaatttaactcaaatacaacaattgatg 96  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50968202 cgaagaagattgaagatgattttcttatagattacattatttagaagatgatatcgctgaaaaatttaactcaaatacaacaattgatg 50968290  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 150 - 242
Target Start/End: Original strand, 50968344 - 50968438
Alignment:
Q  150 ggatgtatcttataatttcttaagtttcatatatttat--atggatgattgaaatatttgagttggatcactgatggatgaacatggatgtatga 242  Q
    |||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50968344 ggatgtatcttataatttcttaagtttcatatatatatgtatggatgattgaaatatttgagttggatcactgatggatgaacatggatgtatga 50968438  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 50970238 - 50970275
Alignment:
Q  16 attgaagatgattttcttatagattacatgatttagaa 53  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  50970238 attgaagatgattttctcatagattacatgatttagaa 50970275  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 22240745 - 22240786
Alignment:
Q  188 atggatgattgaaatatttgagttggatcactgatggatgaa 229  Q
    |||||||||||||||||||||||| ||| | |||||||||||    
T  22240745 atggatgattgaaatatttgagtttgatgaatgatggatgaa 22240786  T

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