View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21186_low_3 (Length: 264)
Name: NF21186_low_3
Description: NF21186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21186_low_3 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 43657411 - 43657658
Alignment:
| Q |
18 |
ttaaagcgtcagaagagatgggaagaagttgggaag-aagtgcttttgtttgtagccccaaagatgaagtagaagaaacctctgttggtcgcttcttctc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43657411 |
ttaaagcgtcagaagagatgggaagaagttggtcatcaagtgcttttgtttgtagccccaaagatgaagtagaagaaacctctgtaggtcgcttcttctc |
43657510 |
T |
|
| Q |
117 |
atgtggctttggggtgaaggagaggttttggaatagacaacaaaacacaaagaaatccgttgaagtaaagtccgaaatttttcttcttcccaatgatatt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||| ||| |||| |
|
|
| T |
43657511 |
atgtggctttggggtgaaggagaggttttggaatagacaacaaaacacagagaaatccattgaagtaaagtccgaaatctttcttcttcccgatggtatt |
43657610 |
T |
|
| Q |
217 |
cttgaaatgtgtttggatcgtgttccattcgaaagtctcgataatgct |
264 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
43657611 |
cttgaaatgtgtttggatcgtgttgcatgcgaaagtctcgataatgct |
43657658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 255
Target Start/End: Original strand, 10367339 - 10367433
Alignment:
| Q |
161 |
acacaaagaaatccgttgaagtaaagtccgaaatttttcttcttcccaatgatattcttgaaatgtgtttggatcgtgttccattcgaaagtctc |
255 |
Q |
| |
|
|||||||| ||| |||||||||| |||| | | | ||||||||||| |||| ||||||||| |||||||||||||| ||||||||||| ||||| |
|
|
| T |
10367339 |
acacaaaggaatgcgttgaagtagagtctggactctttcttcttcctgatgacattcttgaattgtgtttggatcgtcttccattcgaaggtctc |
10367433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 10378878 - 10378958
Alignment:
| Q |
175 |
gttgaagtaaagtccgaaatttttcttcttcccaatgatattcttgaaatgtgtttggatcgtgttccattcgaaagtctc |
255 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| |||| ||||||||| |||||||| || || ||||||| ||||||||| |
|
|
| T |
10378878 |
gttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctc |
10378958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 10367262 - 10367314
Alignment:
| Q |
120 |
tggctttggggtgaaggagaggttttggaatagacaacaaaacacaaagaaat |
172 |
Q |
| |
|
|||||| |||||||||||| |||||||||| || ||||| ||| ||||||||| |
|
|
| T |
10367262 |
tggcttcggggtgaaggagtggttttggaagaggcaacacaacccaaagaaat |
10367314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University