View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21186_low_5 (Length: 236)
Name: NF21186_low_5
Description: NF21186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21186_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 43673871 - 43673664
Alignment:
| Q |
14 |
aatatatatagacaagtgatcaataaggtgaaaattaaaaacaagaattcagatatttccatcctctttttctttgatcttttcacgtcattctgaaatt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43673871 |
aatatatatagacaagtgatcaataaggtgaaaattaaaaacaagaattcagatatttccatcctctttttctttgatcttttcacgtcattctgaaatt |
43673772 |
T |
|
| Q |
114 |
tgtaatgaaaaggaaatataattaataagtagccaatgatatgaccacaaaaaatattctacactatttttaatgggaatcaagtacttgtgctatcaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43673771 |
tgtaatgaaaaggaaatataattaataagtagccaatgatatgaccacaaaaaatattctacactatttttaatgggaatcaagtacttgtgctatcaat |
43673672 |
T |
|
| Q |
214 |
gatcaaat |
221 |
Q |
| |
|
|||||||| |
|
|
| T |
43673671 |
gatcaaat |
43673664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University