View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21187_high_1 (Length: 1096)
Name: NF21187_high_1
Description: NF21187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21187_high_1 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 659; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 272 - 1079
Target Start/End: Original strand, 3467492 - 3468285
Alignment:
| Q |
272 |
gttaacaatgtaaattgttgaatgtctttaatcctttttcttgtcaccaatgtaaattgttgtcaaaatttgattgtcgaaatatcatttctcttgtcat |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3467492 |
gttaacaatgtaaattgttgaatgtctttaatcctttctcttgtcagcaatgtaaattgttgtcaaaat--------------atcatttctcttgtcat |
3467577 |
T |
|
| Q |
372 |
atacagtacacactccaaaaatggggaaaaatccttttctgaatatcatttgttttgaattcatataagnnnnnnntgataagtttaagctcaagttatt |
471 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
3467578 |
atacagtacacactccaaaaatggggtaaaatccttttctggatatcatttgttttgaattcacataagaaaaaa-tgataagtttaagctcaagttatt |
3467676 |
T |
|
| Q |
472 |
gacagtgtcgtattcctaaagcaatctacctcaactttttcacattcgaaccagtcnnnnnnntcatcaacattatccctctccctcaaagaataaaaac |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3467677 |
gacagtgtcgtattcctaaagcaatctacctcaactttttcacattcgaaccagtcaaaaaaatcatcaacattatccctctccctcaaagaataaaaac |
3467776 |
T |
|
| Q |
572 |
aaaaagtcacattacttgatagcaggtagatattgtgcacaaatgctgcacataatcgaatagaaaaaagaaaattggtttctttacccatttgagaaca |
671 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3467777 |
aaaaagtcacattactagatagcaggtagatattgtgcacaaatgctgcacataatcgaatagaaaaaagaaaattggtttctttacccatttgagaaca |
3467876 |
T |
|
| Q |
672 |
aaaaacaaatcttgcttatgtaggcagaatatccgttttacctacatacatcacatgtgattcctcgagatgtgatagcaacctaagaattgttatttag |
771 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
3467877 |
aaaaacaaatcttgcttatgtaggcagaatatccgttttacctacatacatcacatgcgattccttgagatgtgatagcaacctaagaattattatttag |
3467976 |
T |
|
| Q |
772 |
ttgatgatgatgacatagtgagtgctatgctacactaa-acacatgtgtgttaggacattgatttcaagtgttctctgaaaattctcaacatactttgaa |
870 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3467977 |
ttgatgatgatgacatagtgagtgctatgctacactaacacatgtgtgtgttaggacattgatttcaagtgttctctgaaaattctcaacatactttgaa |
3468076 |
T |
|
| Q |
871 |
aagtaacaatcccatacaaggtaccatcttcttgtaccacccagacataactcacacgatgagaaagtgcttgaatcattacagcaaccaaagagctcca |
970 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3468077 |
aagtaacaatcccatacaaggtaccatcttcttgtaccacccagacataactcacacgatgagaaagtgcttgaatcattacagcaaccaaagagctcca |
3468176 |
T |
|
| Q |
971 |
agggtaacaaacaatagcctctgaccttctcataatccttgaagagtatcctccaagtttccaattcttccctaatgagcaaatatcttcctccgatgaa |
1070 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3468177 |
agggtaacaaacaatagcctctgaccttctcataatccttgaagagaatcctccaagtttccaattcttccctaatgagcaaatatcttcctccgatgaa |
3468276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 929 - 992
Target Start/End: Original strand, 33553790 - 33553853
Alignment:
| Q |
929 |
atgagaaagtgcttgaatcattacagcaaccaaagagctccaagggtaacaaacaatagcctct |
992 |
Q |
| |
|
|||||||| |||||||||||| ||||||| |||||||||| || | |||||||||||||||| |
|
|
| T |
33553790 |
atgagaaattgcttgaatcatcacagcaatcaaagagctcttgggatgacaaacaatagcctct |
33553853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 225; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 13228046 - 13227794
Alignment:
| Q |
9 |
atctcgaagaaaataccaaacattcctcgttatttatatttattcttaagcaagtctccaaaagtgcttagttgagccatcatttctatttcgtctttcg |
108 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13228046 |
atctccaaaaaaataccaaacattcctcgttatttatatttattcttaagcaagtcccaaaaagtccttagttgagccatcatttctatttcgtctttcg |
13227947 |
T |
|
| Q |
109 |
tttcgatagatatatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13227946 |
tttcgatagatatatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatag |
13227847 |
T |
|
| Q |
209 |
atcctgctcatggattaacgaaaatgtgcagaagctctatttgcctctgccat |
261 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13227846 |
accctgctcatggattaacgaaaatgtgcaaaagctctatttgcctctgccat |
13227794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 137 - 261
Target Start/End: Original strand, 53883670 - 53883788
Alignment:
| Q |
137 |
ttctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatggattaacgaaaatgtg |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||| |
|
|
| T |
53883670 |
ttctttttctattgattcttttccaattat------ggatggatccatacataggtctatgtgtgtgtatagatcctgctcattgattaatgaaaatgtg |
53883763 |
T |
|
| Q |
237 |
cagaagctctatttgcctctgccat |
261 |
Q |
| |
|
|| ||| |||||||||||||||||| |
|
|
| T |
53883764 |
caaaagatctatttgcctctgccat |
53883788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 47522832 - 47522608
Alignment:
| Q |
9 |
atctcgaagaaaataccaaacattcctcgttatttatatttattcttaagcaagtctccaaaagtgcttagttgagccatcatttctatttcgtctttcg |
108 |
Q |
| |
|
||||| || |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47522832 |
atctccaaaaaaataccaaacattcctggttatttatatttattcttaagcaagtccccaaaagtgtttagttgagccatcatttctatttcgtctttcg |
47522733 |
T |
|
| Q |
109 |
tttcgatagatatatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatag |
208 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47522732 |
tttcgataaatatatcgattaattccgattctttttctatcgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtacatag |
47522633 |
T |
|
| Q |
209 |
atcctgctcatggattaacgaaaat |
233 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
47522632 |
atcctactcatggattaacgaaaat |
47522608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 3e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 3e-88
Query Start/End: Original strand, 45 - 261
Target Start/End: Complemental strand, 42680336 - 42680126
Alignment:
| Q |
45 |
tatttattcttaagcaagtctccaaaagtgcttagttgagccatcatttctatttcgtctttcgtttcgatagatatatcgattaattccgattcttttt |
144 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42680336 |
tatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctattttgtctttcgtttccatagatatatcgattaattccgattcttttt |
42680237 |
T |
|
| Q |
145 |
ctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatggattaacgaaaatgtgcagaagct |
244 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
42680236 |
ctattgattcttttccaa------ttatgtatggatccatacataggtctacgtgtgtatatagatcctactcatggattaacgaaaatgtgcaaaagct |
42680143 |
T |
|
| Q |
245 |
ctatttgcctctgccat |
261 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
42680142 |
ctatttgcttctgccat |
42680126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 45 - 166
Target Start/End: Original strand, 35934647 - 35934768
Alignment:
| Q |
45 |
tatttattcttaagcaagtctccaaaagt-gcttagttgagccatcatttctatttcgtctttcgtttcgatagatatatcgattaattccgattctttt |
143 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||||| |||||||| |||||||| |||||||||||||||||||||||| ||||||| |||| |||| |
|
|
| T |
35934647 |
tatttattcttaagcaagtcctcaaaagttggttagttaagccatcaattctattt-gtctttcgtttcgatagatatatctattaattatgattatttt |
35934745 |
T |
|
| Q |
144 |
tctattgattcttttccaattat |
166 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
35934746 |
tctattgattcttttccaattat |
35934768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 192063 - 192007
Alignment:
| Q |
205 |
atagatcctgctcatggattaacgaaaatgtgcagaagctctatttgcctctgccat |
261 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
192063 |
atagattctgttcatggattaacgaaaatgtgcaagagctctatttgcctctgccat |
192007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University