View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21187_high_13 (Length: 347)

Name: NF21187_high_13
Description: NF21187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21187_high_13
NF21187_high_13
[»] chr8 (12 HSPs)
chr8 (5-337)||(11770819-11771169)
chr8 (27-100)||(11784873-11784946)
chr8 (122-199)||(8629488-8629565)
chr8 (27-98)||(11765027-11765098)
chr8 (128-188)||(779033-779093)
chr8 (129-177)||(11183584-11183632)
chr8 (124-171)||(2091797-2091844)
chr8 (270-337)||(11784459-11784526)
chr8 (118-177)||(30259142-30259201)
chr8 (129-179)||(27119910-27119960)
chr8 (122-200)||(27645936-27646014)
chr8 (52-100)||(11779594-11779642)
[»] chr5 (10 HSPs)
chr5 (99-177)||(13604832-13604910)
chr5 (137-187)||(18700431-18700481)
chr5 (99-177)||(21768180-21768258)
chr5 (99-188)||(18704009-18704097)
chr5 (130-193)||(18286831-18286894)
chr5 (139-177)||(5531083-5531121)
chr5 (128-182)||(7674686-7674740)
chr5 (128-182)||(38766523-38766577)
chr5 (115-152)||(26618198-26618235)
chr5 (130-206)||(4273331-4273407)
[»] chr2 (7 HSPs)
chr2 (99-182)||(44606088-44606171)
chr2 (98-176)||(37034030-37034108)
chr2 (118-177)||(10285888-10285947)
chr2 (158-188)||(7033273-7033303)
chr2 (129-182)||(9878660-9878713)
chr2 (99-180)||(40158727-40158808)
chr2 (129-177)||(43065433-43065481)
[»] chr6 (14 HSPs)
chr6 (129-241)||(2460070-2460182)
chr6 (128-188)||(33832245-33832305)
chr6 (120-177)||(33498649-33498706)
chr6 (129-177)||(20377903-20377951)
chr6 (118-182)||(31624118-31624182)
chr6 (123-182)||(1575928-1575987)
chr6 (99-170)||(4246419-4246490)
chr6 (118-181)||(20368159-20368222)
chr6 (153-200)||(26559199-26559246)
chr6 (129-198)||(7931688-7931757)
chr6 (117-170)||(9327071-9327124)
chr6 (123-182)||(1575783-1575843)
chr6 (137-177)||(1669781-1669821)
chr6 (117-177)||(30863273-30863333)
[»] chr4 (8 HSPs)
chr4 (129-241)||(27123271-27123383)
chr4 (99-178)||(46110212-46110291)
chr4 (129-179)||(20936210-20936260)
chr4 (128-177)||(2996611-2996660)
chr4 (122-179)||(4691880-4691937)
chr4 (129-177)||(3176087-3176135)
chr4 (118-146)||(41265759-41265787)
chr4 (129-181)||(50800009-50800061)
[»] chr3 (13 HSPs)
chr3 (98-170)||(26542545-26542617)
chr3 (122-177)||(24281079-24281134)
chr3 (118-177)||(37273162-37273221)
chr3 (122-177)||(3015826-3015881)
chr3 (131-198)||(34707458-34707525)
chr3 (99-182)||(39602188-39602271)
chr3 (118-177)||(40880931-40880990)
chr3 (128-179)||(41724250-41724301)
chr3 (118-181)||(47132022-47132085)
chr3 (121-179)||(5391910-5391968)
chr3 (128-177)||(34382980-34383029)
chr3 (129-170)||(41452562-41452603)
chr3 (120-208)||(45541601-45541689)
[»] chr1 (11 HSPs)
chr1 (129-207)||(33108575-33108653)
chr1 (129-198)||(17420242-17420311)
chr1 (129-181)||(35669011-35669063)
chr1 (99-181)||(37842334-37842416)
chr1 (99-177)||(38867814-38867892)
chr1 (129-170)||(4868439-4868480)
chr1 (128-181)||(29635385-29635438)
chr1 (129-182)||(45394154-45394207)
chr1 (129-177)||(6262777-6262825)
chr1 (129-181)||(40414001-40414053)
chr1 (131-179)||(42336656-42336704)
[»] chr7 (9 HSPs)
chr7 (99-172)||(44821968-44822041)
chr7 (122-201)||(6601399-6601478)
chr7 (123-182)||(15740389-15740448)
chr7 (122-177)||(46082068-46082123)
chr7 (129-170)||(39771800-39771841)
chr7 (123-182)||(15740533-15740593)
chr7 (121-181)||(19719037-19719097)
chr7 (137-181)||(28520991-28521035)
chr7 (153-181)||(30535626-30535654)


Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 5 - 337
Target Start/End: Complemental strand, 11771169 - 11770819
Alignment:
Q  5 catttacaagagcattgacaaatggaaaacaacctatagatggtgtgttaagaagcccaaatttcctccctccaatctcatgcactccctgaaattttca 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11771169 catttacaagagcattgacaaatggaaaacaacctatagatggtgtgttaagaagcccaaatttcctccctccaatctcatgcactccctgaaattttca 11771070  T
Q  105 taagatattattaagaa---cttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtctaacaaata 201  Q
    |||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11771069 taagatattattaaaaaaaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacagtctaacaaata 11770970  T
Q  202 tttatactggtcgataaacttaaagaagtaaatccaaacatgtctttattataacgaaatgaact---------------tatagaagtaaagtgacttt 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||    
T  11770969 tttatactggtcgataaacttaaagaagtaaatccaaacatgtctttattataacgaaatgaactttaatattaaaaaaatatagaagtaaagtgacttt 11770870  T
Q  287 tacatactttgatccaagttgtaatattaccaaccaccattgatacatatt 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11770869 tacatactttgatccaagttgtaatattaccaaccaccattgatacatatt 11770819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 11784946 - 11784873
Alignment:
Q  27 tggaaaacaacctatagatggtgtgttaagaagcccaaatttcctccctccaatctcatgcactccctgaaatt 100  Q
    |||||||||||| | |||||||  |||||||| ||||||||||||||||||||||||||| | || ||||||||    
T  11784946 tggaaaacaaccaaaagatggttggttaagaatcccaaatttcctccctccaatctcatgtattctctgaaatt 11784873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 8629488 - 8629565
Alignment:
Q  122 cttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtctaacaaa 199  Q
    |||||||| | |||||||||||||| |||   ||| |||||||||||||||||||||||| | ||||||||| |||||    
T  8629488 cttataaatagaagttgaaaacaacttatgatcatgtcataagttgttttcataagttctctcaaacggtctcacaaa 8629565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 11765098 - 11765027
Alignment:
Q  27 tggaaaacaacctatagatggtgtgttaagaagcccaaatttcctccctccaatctcatgcactccctgaaa 98  Q
    |||||||||||| | |||||||  |||||||| ||| ||||||||||| ||||||||||| | |||||||||    
T  11765098 tggaaaacaaccaagagatggttggttaagaatcccgaatttcctcccaccaatctcatgtattccctgaaa 11765027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 779093 - 779033
Alignment:
Q  128 aaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaac 188  Q
    |||||||| |||||||||| |||  |||| ||||||||||||||| |||||||||| ||||    
T  779093 aaaataagatgaaaacaacttatgaacatgtcataagttgttttcgtaagttctttcaaac 779033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 11183584 - 11183632
Alignment:
Q  129 aaataagttgaaaacaacgtatagacatatcataagttgttttcataag 177  Q
    ||||||| |||||||| | |||||||||||||||||||||||| |||||    
T  11183584 aaataagctgaaaacagcttatagacatatcataagttgtttttataag 11183632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 2091797 - 2091844
Alignment:
Q  124 tataaaaataagttgaaaacaacgtatagacatatcataagttgtttt 171  Q
    |||| |||||||||||||||||| ||| || |||||||||||||||||    
T  2091797 tatagaaataagttgaaaacaacttatggatatatcataagttgtttt 2091844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 337
Target Start/End: Complemental strand, 11784526 - 11784459
Alignment:
Q  270 agaagtaaagtgacttttacatactttgatccaagttgtaatattaccaaccaccattgatacatatt 337  Q
    ||||||||||| ||| |||||||||||||||   ||||||| ||||||||| ||||| ||||| ||||    
T  11784526 agaagtaaagtaactcttacatactttgatcactgttgtaagattaccaactaccatggatacgtatt 11784459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 30259142 - 30259201
Alignment:
Q  118 agaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 177  Q
    |||||||||  ||||||  |||||||||| ||||||||||||||||| ||||| ||||||    
T  30259142 agaacttatggaaataaactgaaaacaacttatagacatatcataagctgtttccataag 30259201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 27119960 - 27119910
Alignment:
Q  129 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagtt 179  Q
    ||||||| |||||||||| ||||||||| |||| ||| |||||||||||||    
T  27119960 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagtt 27119910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 27645936 - 27646014
Alignment:
Q  122 cttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtctaacaaat 200  Q
    |||||| |||||||||||||| | | |||||| || ||||||||||| | |||||| ||| | ||||||||| ||||||    
T  27645936 cttatagaaataagttgaaaatagcttatagatatgtcataagttgtatgcataagctctctcaaacggtcttacaaat 27646014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 11779642 - 11779594
Alignment:
Q  52 ttaagaagcccaaatttcctccctccaatctcatgcactccctgaaatt 100  Q
    ||||||| |||||||||||||||||| |||||||  | |||||||||||    
T  11779642 ttaagaatcccaaatttcctccctcccatctcatatattccctgaaatt 11779594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 13604910 - 13604832
Alignment:
Q  99 ttttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 177  Q
    |||||||||| |||  | |||| ||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||    
T  13604910 ttttcataagttatcttgaagagcttatgaaaataagttgaaaacaacgtatggacatgtcataagctgttttcataag 13604832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 18700431 - 18700481
Alignment:
Q  137 tgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaa 187  Q
    |||||||||| ||||||||| ||||||||||||| |||||| |||||||||    
T  18700431 tgaaaacaacttatagacatgtcataagttgtttccataagctcttttaaa 18700481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 21768258 - 21768180
Alignment:
Q  99 ttttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 177  Q
    |||||||||| |||  | |||| ||||  ||||||||||||||||| ||||| ||||| ||||||| ||||||||||||    
T  21768258 ttttcataagttatcttgaagagcttacgaaaataagttgaaaacagcgtatggacatgtcataagctgttttcataag 21768180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 18704097 - 18704009
Alignment:
Q  99 ttttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaac 188  Q
    |||||||||| |||||  |||| |||||  ||||||| |||||||||| ||||||||| | |||||||| ||||||||| ||| ||||||    
T  18704097 ttttcataagctattacaaagatcttatggaaataagctgaaaacaacttatagacatgttataagttg-tttcataagctctcttaaac 18704009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 18286831 - 18286894
Alignment:
Q  130 aataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtct 193  Q
    |||||| | |||||||  |||||| ||||||||||||||||  ||||| |||||||||||||||    
T  18286831 aataagctaaaaacaatttatagatatatcataagttgtttcaataagctcttttaaacggtct 18286894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 5531083 - 5531121
Alignment:
Q  139 aaaacaacgtatagacatatcataagttgttttcataag 177  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  5531083 aaaacaacttatggacatatcataagttgttttcataag 5531121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 7674686 - 7674740
Alignment:
Q  128 aaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttctt 182  Q
    |||||||| |||||||| | |||| |||| ||||||||||||| |||||||||||    
T  7674686 aaaataagctgaaaacaccttataaacatgtcataagttgtttccataagttctt 7674740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 38766577 - 38766523
Alignment:
Q  128 aaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttctt 182  Q
    ||||||||| ||||||||| ||| ||| | ||||||||||||| |||||||||||    
T  38766577 aaaataagtcgaaaacaacttatggacgtgtcataagttgtttccataagttctt 38766523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 26618198 - 26618235
Alignment:
Q  115 ttaagaacttataaaaataagttgaaaacaacgtatag 152  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  26618198 ttaagaacttataaaaataagctgaaaacaacttatag 26618235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 4273407 - 4273331
Alignment:
Q  130 aataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtctaacaaatatttat 206  Q
    ||||||||||||||||| ||||||||  ||||||| ||||| |||| ||||| | ||||  ||| |||||| |||||    
T  4273407 aataagttgaaaacaacttatagacaagtcataagctgtttccataggttctctcaaacaatctcacaaatgtttat 4273331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 44606171 - 44606088
Alignment:
Q  99 ttttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttctt 182  Q
    |||||||||| |||| | ||  |||||| ||||| || |||||||||| ||| ||||| |||||||||||||||||||||||||    
T  44606171 ttttcataagttattctaaaacacttatgaaaatcagctgaaaacaacttatggacatgtcataagttgttttcataagttctt 44606088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 37034030 - 37034108
Alignment:
Q  98 attttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataa 176  Q
    ||||||||||||||||||  ||| |||||| |||||||||||||||||  |||| |||| || |||| ||||| |||||    
T  37034030 attttcataagatattatggagagcttatagaaataagttgaaaacaatttataaacatgtcttaagctgtttccataa 37034108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 10285888 - 10285947
Alignment:
Q  118 agaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 177  Q
    |||||||||  |||||||||||||||| | ||| ||||| ||||||||| ||||||||||    
T  10285888 agaacttatggaaataagttgaaaacagcttatggacatgtcataagttattttcataag 10285947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 188
Target Start/End: Complemental strand, 7033303 - 7033273
Alignment:
Q  158 tcataagttgttttcataagttcttttaaac 188  Q
    |||||||||||||||||||||||||||||||    
T  7033303 tcataagttgttttcataagttcttttaaac 7033273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 9878713 - 9878660
Alignment:
Q  129 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagttctt 182  Q
    |||||||| ||||||||| ||| ||||| ||||||||||||| |||||| ||||    
T  9878713 aaataagtcgaaaacaacttatggacatgtcataagttgtttccataagctctt 9878660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 40158727 - 40158808
Alignment:
Q  99 ttttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttc 180  Q
    |||||||||| |||| |  ||| |||||  || |||| |||||||||| |||| |||| ||||||| |||||||||||||||    
T  40158727 ttttcataagttattctggagagcttatgtaattaagctgaaaacaacttataaacatgtcataagctgttttcataagttc 40158808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 43065481 - 43065433
Alignment:
Q  129 aaataagttgaaaacaacgtatagacatatcataagttgttttcataag 177  Q
    ||||||| |||||||||  ||| ||||| ||||||||||||||||||||    
T  43065481 aaataagctgaaaacaatttatggacatgtcataagttgttttcataag 43065433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 241
Target Start/End: Complemental strand, 2460182 - 2460070
Alignment:
Q  129 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtctaacaaatatttatactggtcgataaacttaaagaa 228  Q
    |||||||||||||||||| || |||||| ||||||||||||| |||||| ||| | |||| |||| |||| || |||| || ||  |||| || ||| ||    
T  2460182 aaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaataa 2460083  T
Q  229 gtaaatccaaaca 241  Q
    || ||||||||||    
T  2460082 gttaatccaaaca 2460070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 33832305 - 33832245
Alignment:
Q  128 aaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaac 188  Q
    |||||||| | |||||||| |||| |||| |||||||||||||||||||||||| ||||||    
T  33832305 aaaataagctaaaaacaacttataaacatgtcataagttgttttcataagttctcttaaac 33832245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 33498649 - 33498706
Alignment:
Q  120 aacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 177  Q
    |||||||  ||||||| |||||| ||| ||||||||| ||||||||||||||||||||    
T  33498649 aacttatggaaataagctgaaaataacctatagacatgtcataagttgttttcataag 33498706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 20377951 - 20377903
Alignment:
Q  129 aaataagttgaaaacaacgtatagacatatcataagttgttttcataag 177  Q
    |||||||  ||||||||| ||||||||| ||||||||||||||||||||    
T  20377951 aaataagccgaaaacaacttatagacatgtcataagttgttttcataag 20377903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 31624118 - 31624182
Alignment:
Q  118 agaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttctt 182  Q
    |||| |||| ||||||||||||||||| | |||  |||| ||||||| |||||||||||||||||    
T  31624118 agaaattatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagttctt 31624182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 1575928 - 1575987
Alignment:
Q  123 ttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttctt 182  Q
    |||| |||||||||| |||||| | |||  |||| |||||||||||||||||||||||||    
T  1575928 ttatgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcataagttctt 1575987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 4246419 - 4246490
Alignment:
Q  99 ttttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttt 170  Q
    |||||||||| ||||||  ||| | ||||||||||||||||||||| | ||| ||||| |||| ||||||||    
T  4246419 ttttcataagctattatggagagcatataaaaataagttgaaaacagcttatggacatgtcatgagttgttt 4246490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 20368222 - 20368159
Alignment:
Q  118 agaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttct 181  Q
    ||||||||| ||||||||||||||  | | |||  |||| ||||||||||||||||||||||||    
T  20368222 agaacttatgaaaataagttgaaactagcttatgaacatgtcataagttgttttcataagttct 20368159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 26559246 - 26559199
Alignment:
Q  153 acatatcataagttgttttcataagttcttttaaacggtctaacaaat 200  Q
    ||||||||||||||||||||||||||||||  |||| |||| ||||||    
T  26559246 acatatcataagttgttttcataagttcttccaaacagtctcacaaat 26559199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 7931757 - 7931688
Alignment:
Q  129 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtctaacaa 198  Q
    ||||||| |||||||||| ||   |||| |||||||||||||||||||| |||| |||| ||||| ||||    
T  7931757 aaataagctgaaaacaacttaagaacatgtcataagttgttttcataagctcttctaaatggtctcacaa 7931688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 9327071 - 9327124
Alignment:
Q  117 aagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttt 170  Q
    ||||||||||  ||||| |||||||| |||  ||||||||||||||||||||||    
T  9327071 aagaacttatggaaatacgttgaaaataactcatagacatatcataagttgttt 9327124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 1575783 - 1575843
Alignment:
Q  123 ttataaaaataagttgaaaacaacgtatagacatat-cataagttgttttcataagttctt 182  Q
    |||| ||||||||||||||||| | ||| ||||| | |||||| |||||||||||||||||    
T  1575783 ttatgaaaataagttgaaaacaccttatggacatgttcataagctgttttcataagttctt 1575843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 1669821 - 1669781
Alignment:
Q  137 tgaaaacaacgtatagacatatcataagttgttttcataag 177  Q
    |||||||| | ||||||||| ||||||||||||||||||||    
T  1669821 tgaaaacagcttatagacatgtcataagttgttttcataag 1669781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 30863273 - 30863333
Alignment:
Q  117 aagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 177  Q
    |||| |||||| || |||| |||||||||| |||  |||| ||||||||||||||||||||    
T  30863273 aagagcttatagaagtaagctgaaaacaacttatgtacatgtcataagttgttttcataag 30863333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 241
Target Start/End: Complemental strand, 27123383 - 27123271
Alignment:
Q  129 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtctaacaaatatttatactggtcgataaacttaaagaa 228  Q
    |||||||||||||||||| || |||||| ||||||||||||| |||||| ||| | |||| |||| |||| || |||| || ||  |||| || ||| ||    
T  27123383 aaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaataa 27123284  T
Q  229 gtaaatccaaaca 241  Q
    || ||||||||||    
T  27123283 gttaatccaaaca 27123271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 46110212 - 46110291
Alignment:
Q  99 ttttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagt 178  Q
    |||||||||| ||| ||| ||| |||||| ||||||| |||||||||| |||    ||||||||||||||||||||||||    
T  46110212 ttttcataagctatgattgagagcttatagaaataagctgaaaacaacttatgagtatatcataagttgttttcataagt 46110291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 20936260 - 20936210
Alignment:
Q  129 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagtt 179  Q
    ||||||| |||||||| | |||  |||||||||||||||||||||||||||    
T  20936260 aaataaggtgaaaacagcttatgaacatatcataagttgttttcataagtt 20936210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 2996611 - 2996660
Alignment:
Q  128 aaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 177  Q
    ||||||||||||||| | | ||| ||||| ||||||||||||||||||||    
T  2996611 aaaataagttgaaaaaagcttatggacatgtcataagttgttttcataag 2996660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 4691880 - 4691937
Alignment:
Q  122 cttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagtt 179  Q
    ||||| |||||||| |||||||||| ||| | ||| ||||||||||||| ||||||||    
T  4691880 cttatgaaaataagctgaaaacaacatatgggcatgtcataagttgtttccataagtt 4691937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 3176135 - 3176087
Alignment:
Q  129 aaataagttgaaaacaacgtatagacatatcataagttgttttcataag 177  Q
    ||||||| |||||||||| |||||||||  |||||| ||||||||||||    
T  3176135 aaataagctgaaaacaacttatagacatgacataagatgttttcataag 3176087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 146
Target Start/End: Complemental strand, 41265787 - 41265759
Alignment:
Q  118 agaacttataaaaataagttgaaaacaac 146  Q
    |||||||||||||||||||||||||||||    
T  41265787 agaacttataaaaataagttgaaaacaac 41265759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 50800061 - 50800009
Alignment:
Q  129 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagttct 181  Q
    ||||||| |||||||| | ||||||||| ||||||||||||| ||| ||||||    
T  50800061 aaataagctgaaaacagcttatagacatgtcataagttgtttacattagttct 50800009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 26542545 - 26542617
Alignment:
Q  98 attttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttt 170  Q
    ||||||||||| ||||||  |||  ||||  |||||||||||||||||  |||||||||||||||||||||||    
T  26542545 attttcataagctattatggagagtttatggaaataagttgaaaacaagttatagacatatcataagttgttt 26542617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 24281079 - 24281134
Alignment:
Q  122 cttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 177  Q
    ||||| ||| ||||||||||||||| ||| || |||||||||||||||||||||||    
T  24281079 cttatgaaagtaagttgaaaacaacttatggagatatcataagttgttttcataag 24281134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 37273162 - 37273221
Alignment:
Q  118 agaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 177  Q
    |||||||||  |||||||||||||||||| ||| ||||| ||||||||||||| ||||||    
T  37273162 agaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataag 37273221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 3015881 - 3015826
Alignment:
Q  122 cttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 177  Q
    ||||| |||||||| |||||||| | ||| ||||| ||||||||||||||||||||    
T  3015881 cttattaaaataagatgaaaacatcttatggacatgtcataagttgttttcataag 3015826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 34707525 - 34707458
Alignment:
Q  131 ataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtctaacaa 198  Q
    |||||||||||||||| ||| ||||| ||| |||||||||||| ||||||| | |||| |||| ||||    
T  34707525 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 34707458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 39602271 - 39602188
Alignment:
Q  99 ttttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttctt 182  Q
    |||||||||| |||  || ||||||||| ||||||||||||||||||  |||  |||| ||||||| ||| |||||||| ||||    
T  39602271 ttttcataagctatctttgagaacttatgaaaataagttgaaaacaatttatgaacatgtcataagctgtcttcataagctctt 39602188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 40880990 - 40880931
Alignment:
Q  118 agaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 177  Q
    |||| ||||||||||||||| |||||||| ||  | ||| ||||||||||||||||||||    
T  40880990 agaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 40880931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 41724250 - 41724301
Alignment:
Q  128 aaaataagttgaaaacaacgtatagacatatcataagttgttttcataagtt 179  Q
    |||||||| |||||||||| ||| ||||| ||||||||||||| ||||||||    
T  41724250 aaaataagctgaaaacaacttatggacatgtcataagttgtttccataagtt 41724301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 47132022 - 47132085
Alignment:
Q  118 agaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttct 181  Q
    |||||||||||||||||| ||||||||   ||| || ||  |||||||||||||||||||||||    
T  47132022 agaacttataaaaataagctgaaaacagtttatggatatgacataagttgttttcataagttct 47132085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 5391910 - 5391968
Alignment:
Q  121 acttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagtt 179  Q
    |||||| ||||||||||||||||| | |||  |||| ||||||| ||||||||||||||    
T  5391910 acttatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagtt 5391968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 34382980 - 34383029
Alignment:
Q  128 aaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 177  Q
    |||||||| |||||||||| ||||||||||||||||  ||||| ||||||    
T  34382980 aaaataagatgaaaacaacttatagacatatcataatctgtttccataag 34383029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 41452562 - 41452603
Alignment:
Q  129 aaataagttgaaaacaacgtatagacatatcataagttgttt 170  Q
    ||||||| |||||||| | |||||||||||||||||||||||    
T  41452562 aaataaggtgaaaacagcttatagacatatcataagttgttt 41452603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 45541601 - 45541689
Alignment:
Q  120 aacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtctaacaaatatttatac 208  Q
    ||||||| | |||||  |||||||| | |||  |||| ||||||| ||||||||||||||||| ||||| |||| |||| | |||||||    
T  45541601 aacttatgagaataacctgaaaacagcttatgaacatgtcataagctgttttcataagttcttctaaacagtcttacaagtgtttatac 45541689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 33108653 - 33108575
Alignment:
Q  129 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtctaacaaatatttata 207  Q
    |||||||||||||||||| ||| | |||  ||| |||||||||||||||||||| || ||||||| | || ||||||||    
T  33108653 aaataagttgaaaacaacttatggtcatggcatgagttgttttcataagttcttctatacggtctcataagtatttata 33108575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 17420242 - 17420311
Alignment:
Q  129 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtctaacaa 198  Q
    |||||||||||||||||  ||| ||||| | |||||||||||||||||| ||||  |||| |||||||||    
T  17420242 aaataagttgaaaacaatttatggacatgtaataagttgttttcataagctcttcaaaacagtctaacaa 17420311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 35669011 - 35669063
Alignment:
Q  129 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagttct 181  Q
    |||||||||||||||||  ||| ||||||||||||| || |||||||||||||    
T  35669011 aaataagttgaaaacaatttatggacatatcataagctgctttcataagttct 35669063  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 181
Target Start/End: Complemental strand, 37842416 - 37842334
Alignment:
Q  99 ttttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttct 181  Q
    |||||||||| |||  | ||||||||||||||||||| |||||||  | |||  |||| |||| || ||||||||||||||||    
T  37842416 ttttcataagctatcttgaagaacttataaaaataagctgaaaactgcttatgaacatgtcattagatgttttcataagttct 37842334  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 38867892 - 38867814
Alignment:
Q  99 ttttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 177  Q
    |||||||||| |||  | |||||||||| |||||||| | ||||||||  || ||||||||||||||| ||| ||||||    
T  38867892 ttttcataagttatcttgaagaacttatgaaaataagctaaaaacaactgatggacatatcataagttatttccataag 38867814  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 4868439 - 4868480
Alignment:
Q  129 aaataagttgaaaacaacgtatagacatatcataagttgttt 170  Q
    |||||||||||||||||| ||| ||||| |||||||||||||    
T  4868439 aaataagttgaaaacaacttattgacatgtcataagttgttt 4868480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 29635385 - 29635438
Alignment:
Q  128 aaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttct 181  Q
    |||||||| |||||||||| |||| |||| |||||| |||||||||||| ||||    
T  29635385 aaaataagctgaaaacaacttataaacatgtcataacttgttttcataaattct 29635438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 45394154 - 45394207
Alignment:
Q  129 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagttctt 182  Q
    |||||||||||||||| | ||| ||||| ||||||| ||||||| |||||||||    
T  45394154 aaataagttgaaaacagcttatcgacatctcataagctgttttcttaagttctt 45394207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 6262777 - 6262825
Alignment:
Q  129 aaataagttgaaaacaacgtatagacatatcataagttgttttcataag 177  Q
    ||||||| | |||||||| ||| ||||||||||||||| ||||||||||    
T  6262777 aaataagcttaaaacaacttatggacatatcataagttattttcataag 6262825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 40414053 - 40414001
Alignment:
Q  129 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagttct 181  Q
    |||||||||||||||||| ||| ||||| |||| ||||| |||| ||||||||    
T  40414053 aaataagttgaaaacaacttatggacatttcatcagttgctttcgtaagttct 40414001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 42336656 - 42336704
Alignment:
Q  131 ataagttgaaaacaacgtatagacatatcataagttgttttcataagtt 179  Q
    |||||| ||||||||| | | ||||| ||||||||||||||||||||||    
T  42336656 ataagtcgaaaacaacttttggacatgtcataagttgttttcataagtt 42336704  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 44821968 - 44822041
Alignment:
Q  99 ttttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttc 172  Q
    |||||||||| |||| |  ||||||||| ||||||||||||||||||| ||| ||||| |  ||||||||||||    
T  44821968 ttttcataagctattctggagaacttatgaaaataagttgaaaacaacttattgacattttttaagttgttttc 44822041  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 6601399 - 6601478
Alignment:
Q  122 cttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtctaacaaata 201  Q
    ||||| |||||||| ||| || | | ||| ||||| | |||| ||||||||||||||||||| ||||||||| |||||||    
T  6601399 cttatgaaaataagctgagaatagcttatggacattttataatttgttttcataagttctttcaaacggtctcacaaata 6601478  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 15740448 - 15740389
Alignment:
Q  123 ttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttctt 182  Q
    |||| |||||||||| |||||| | |||  |||| |||||||||||||||||||||||||    
T  15740448 ttatgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcataagttctt 15740389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 46082068 - 46082123
Alignment:
Q  122 cttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 177  Q
    ||||| |||||||| |||||||||| ||| | ||| ||||||||||||||||||||    
T  46082068 cttatgaaaataagctgaaaacaacttatggtcatgtcataagttgttttcataag 46082123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 39771800 - 39771841
Alignment:
Q  129 aaataagttgaaaacaacgtatagacatatcataagttgttt 170  Q
    |||||||||||||||| | ||| |||||||||||||||||||    
T  39771800 aaataagttgaaaacagcttatggacatatcataagttgttt 39771841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 15740593 - 15740533
Alignment:
Q  123 ttataaaaataagttgaaaacaacgtatagacatat-cataagttgttttcataagttctt 182  Q
    |||| ||||||||||||||||| | ||| ||||| | |||||| |||||||||||||||||    
T  15740593 ttatgaaaataagttgaaaacaccttatggacatgttcataagctgttttcataagttctt 15740533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 19719037 - 19719097
Alignment:
Q  121 acttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttct 181  Q
    ||||||||| ||||| ||||||||   |||  |||| ||||||||||||||||||||||||    
T  19719037 acttataaagataagctgaaaacagtttatgaacatgtcataagttgttttcataagttct 19719097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 28521035 - 28520991
Alignment:
Q  137 tgaaaacaacgtatagacatatcataagttgttttcataagttct 181  Q
    |||||||| | ||||||||| ||||||||||||| ||||||||||    
T  28521035 tgaaaacagcttatagacatgtcataagttgtttccataagttct 28520991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 181
Target Start/End: Original strand, 30535626 - 30535654
Alignment:
Q  153 acatatcataagttgttttcataagttct 181  Q
    |||||||||||||||||||||||||||||    
T  30535626 acatatcataagttgttttcataagttct 30535654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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