View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21187_high_4 (Length: 495)
Name: NF21187_high_4
Description: NF21187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21187_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 257 - 479
Target Start/End: Complemental strand, 26166778 - 26166556
Alignment:
| Q |
257 |
atggtatttatagagaaagtccaagggtattgtactatagagtttatcacaattgttccaacttgtataaatgaaagattccattcaattgaattctgaa |
356 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26166778 |
atggtatttatagagagagtccaagggtattgtactatagagtttatcacaattgttccaacttgtataaatgaaagattccattcaattgaattctgaa |
26166679 |
T |
|
| Q |
357 |
tattctctctttgcaccctttttcttttatctctctgtccatgcttcccttgctatctagcttgaagactttgttgacttaatatatggaatatcattct |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26166678 |
tattctctctttgcaccctttttcttttatctctctgtccatgcttcccttgctatctagcttgaagactttgttgacttaatatatggaatatcattct |
26166579 |
T |
|
| Q |
457 |
tgcattcttaatgatcgagattc |
479 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
26166578 |
tgcattcttaatgatcgatattc |
26166556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 26167049 - 26166807
Alignment:
| Q |
16 |
atggccgcagttgcagttacgctacaaaccttaatattgcattcaatattgtggtcgtggacataaacttagaagttaaaactatggcttatacaagtgt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26167049 |
atggccgcagttgcagttacgctacaaaccttaatattgcattcaatattgtggtcgtggacataaacttagaagttaaaactatggcttatacaagtgt |
26166950 |
T |
|
| Q |
116 |
gtgctagaatgtgcctatatgacgcgnnnnnnnnnnnnnnnnnnnnnnncctgcgagtttctgcagtctcaaatctgcaatccataattccttaaattga |
215 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26166949 |
gtgctagaatgtgcctatatgacgcggaaaagaaaagaaagaaagaaaacctgcgagtttctgcagtctcaaatctgcaatccataattccttaaattga |
26166850 |
T |
|
| Q |
216 |
ttttactaatcttcttatgatagactagaaagtagaaaagaat |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26166849 |
ttttactaatcttcttatgatagactagaaagtagaaaagaat |
26166807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University