View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21187_high_7 (Length: 396)
Name: NF21187_high_7
Description: NF21187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21187_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 12 - 380
Target Start/End: Complemental strand, 19755695 - 19755327
Alignment:
| Q |
12 |
caagaatatccagataatggtaacaatgtaattgatggagaagcagctgtgaagggccccataaagaaaaatcgagggcgtaaagaaggcaaacctgcta |
111 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| ||||||| |||| | ||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
19755695 |
caagaaaatctagataatggtaacaatgtaactgatggaaaagctgttgtgaagggccccataaagaaaaatcgagggcgtaaacaaggcaaacctagta |
19755596 |
T |
|
| Q |
112 |
gtgcacattcatgcgttggagataatgcgtcgaaggtatctctacttaactttgagaattcccttaattttctttaacaaaccttctttattaacttcga |
211 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19755595 |
gtacacattcatgcgttggagataatgcgtcgaaggtatctctacttaactttgagaattcccttaattttctttaacaaaccttctttattaacttcga |
19755496 |
T |
|
| Q |
212 |
cttttttatgtgtttaagggtgctaaagttagcaatgccgaaacgggcaagcaacaaacacctccttccacttttaaccagtcaattgaccccatctttg |
311 |
Q |
| |
|
|||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19755495 |
ctttttaatgtgtttcagggtgctgaagttagcaatgccgaaacgggcaagcaacaaacacctccttccacttttaaccagtcaattaaccccatctttg |
19755396 |
T |
|
| Q |
312 |
aggacaatatgatagttgactctagtcctcccaaagatgatgaagaccgagagaaaatgctttctgaac |
380 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19755395 |
aggacaatatgataattgactctagtcctcccaaagatgatgaagacccagagaaaatgctttctgaac |
19755327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University