View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21187_low_13 (Length: 356)
Name: NF21187_low_13
Description: NF21187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21187_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 48882115 - 48882444
Alignment:
| Q |
19 |
aacccatacgttgcattggtatgtatgtaagcaaacctaacaacaatctttgtaacaaacccaggtctcatcttaaacacattcttccaccctttctcat |
118 |
Q |
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| T |
48882115 |
aacccatacgttgcattggtatgtatgtaagcaaacctaacaacaatctttgtaacaaacccaggtctcatcttaaacacattcttccaccctttctcat |
48882214 |
T |
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| Q |
119 |
aatcaggcaccttaactttcttcccacgtgcatgctcatccacgtggcacttcacggcatcattatttttcgtcatacaatccttaaattcatcagattt |
218 |
Q |
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| T |
48882215 |
aatcaggcaccttaactttcttcccacgtgcatgctcatccacgtggcacttcacagcatcattatttttcgtcatacaatccttaaattcatcagattt |
48882314 |
T |
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| Q |
219 |
cacaagctcggtctgatccaaaaccttaaacaaacccaaatgaatatgaagtgggtgattatcatcagtcaaattaatcacataccacacctcactggac |
318 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48882315 |
cactagctcggtctgatccaaaaccttaaacaaacccaaatgaatatgaagtgggtgattatcatcagtcaaattaatcacataccacacctcactggac |
48882414 |
T |
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| Q |
319 |
cccactttcgcaatttctgtaacctatgct |
348 |
Q |
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||||||||||||||||||||||||| |||| |
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| T |
48882415 |
cccactttcgcaatttctgtaacctgtgct |
48882444 |
T |
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