View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21187_low_15 (Length: 346)
Name: NF21187_low_15
Description: NF21187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21187_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 7724110 - 7723778
Alignment:
| Q |
1 |
atgtgacgataccatagaaccatcgcaatcaaaaacatcttctacatatcattatcattggtcttgaccgtcctagctgctttactaaatctattactat |
100 |
Q |
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| T |
7724110 |
atgtgacgataccatagaaccatcgcaatcaaaaacatcttctacatatcattatcattggtcttgaccgtcctagctgctttactaaatctattactat |
7724011 |
T |
|
| Q |
101 |
tttaacattattattaatatttttcatgaacgaggcttgttctatcagagtctccaagagagaaatggaatgccattttcagaatcatgattggtttcat |
200 |
Q |
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| T |
7724010 |
tataacattattattaatatttttcatgaacgaggcttgttctatcagagtctccaagagagaaatggaatgccattttcagaatcatgattggtttcat |
7723911 |
T |
|
| Q |
201 |
caatgaaacggaactcgttagtcattgctggagagaaacactgcatcttctggttctgtggttgtacgtaccatgagttgttgttg---ttgtgatggtg |
297 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7723910 |
caatgaaacggaactcgttagtaattgccggagagaaacactgcatcttctggttctgtggttgtacgtaccatgagttgttgttgttgttgtgatggtg |
7723811 |
T |
|
| Q |
298 |
gtggtggttatacatcgaagctgactccattac |
330 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
7723810 |
gtggtggttatacatcgaagctgactccattac |
7723778 |
T |
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