View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21187_low_18 (Length: 311)

Name: NF21187_low_18
Description: NF21187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21187_low_18
NF21187_low_18
[»] chr3 (1 HSPs)
chr3 (9-288)||(36745223-36745502)
[»] chr8 (11 HSPs)
chr8 (166-271)||(6274156-6274261)
chr8 (166-271)||(6288406-6288511)
chr8 (166-271)||(6331535-6331640)
chr8 (166-271)||(6351894-6351999)
chr8 (166-265)||(6390630-6390729)
chr8 (166-256)||(7458732-7458822)
chr8 (166-271)||(6321028-6321133)
chr8 (166-265)||(6409835-6409934)
chr8 (166-268)||(6362830-6362932)
chr8 (166-256)||(7471134-7471224)
chr8 (145-274)||(6450452-6450581)
[»] chr1 (1 HSPs)
chr1 (168-271)||(36925655-36925758)
[»] chr5 (2 HSPs)
chr5 (145-274)||(9605567-9605696)
chr5 (75-147)||(9605326-9605398)


Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 9 - 288
Target Start/End: Original strand, 36745223 - 36745502
Alignment:
Q  9 gatgtcgaagaatatggagctgtgagtaaagtgctgttgcctccagaaggacatggtgttcaaagaacaatttggcaattggccaaggcgtatgtagttg 108  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745223 gatggcgaaaaatatggagctgtgagtaaagtgctgttgcctccagaaggacatggtgttcaaagaacaatttggcaattggccaaggcgtatgtagttg 36745322  T
Q  109 taaatgacgcctgctttcaccaactcatgagtcactggttgaatacccattgcgtgattgagccattcatcatagctacaaatagatgtctcagtgtggt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36745323 taaatgacgcctgctttcaccaactcatgagtcactggttgaatacacattgcgtgattgagccattcatcatagctacaaataggtgtctcagtgtggt 36745422  T
Q  209 tcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgcacttgctcggagttcattgatca 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745423 tcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgcacttgctcggagttcattgatca 36745502  T

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Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 166 - 271
Target Start/End: Complemental strand, 6274261 - 6274156
Alignment:
Q  166 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 265  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||||||||||||||||||| |||  || |||||||||||||||||||| || |||||    
T  6274261 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcatcctattcataagcttttacttccgcactatcgtgacacaatgaacattaatgc 6274162  T
Q  266 acttgc 271  Q
    ||||||    
T  6274161 acttgc 6274156  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 166 - 271
Target Start/End: Complemental strand, 6288511 - 6288406
Alignment:
Q  166 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 265  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||||||||||||||||||| |||  || |||||||||||||||||||| || |||||    
T  6288511 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcatcctattcataagcttttacttccgcactatcgtgacacaatgaacattaatgc 6288412  T
Q  266 acttgc 271  Q
    ||||||    
T  6288411 acttgc 6288406  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 271
Target Start/End: Complemental strand, 6331640 - 6331535
Alignment:
Q  166 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 265  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| |||||||| || |||||||  || || ||||||||||||||||| || |||||    
T  6331640 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccctattcacaaacttctacttccacattatcgtgacacaatgaacattaatgc 6331541  T
Q  266 acttgc 271  Q
    ||||||    
T  6331540 acttgc 6331535  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 271
Target Start/End: Complemental strand, 6351999 - 6351894
Alignment:
Q  166 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 265  Q
    ||||||||||||||||||| ||||| ||   ||| ||||||||||| ||||||||||| ||| |||  |||||||| |||||||||||||| || |||||    
T  6351999 ttgagccattcatcatagcaacaaacaggcatcttagtgtggttcaccctattcataaacttttacttcctcactaccgtgacacaatgaacataaatgc 6351900  T
Q  266 acttgc 271  Q
    ||||||    
T  6351899 acttgc 6351894  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 265
Target Start/End: Complemental strand, 6390729 - 6390630
Alignment:
Q  166 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 265  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| ||||||||||| ||| |||  || ||||||||| |||||||||| || |||||    
T  6390729 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccctattcataaacttttacttccacactatcgtaacacaatgaacataaatgc 6390630  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 7458822 - 7458732
Alignment:
Q  166 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaa 256  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| ||||||||||| ||| |||  || ||||| ||||||||||||||    
T  7458822 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccctattcataaacttttacttccacactaccgtgacacaatgaa 7458732  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 166 - 271
Target Start/End: Complemental strand, 6321133 - 6321028
Alignment:
Q  166 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 265  Q
    ||||||||||||||||||| || |||||   ||| ||||||||||| |||||||| || ||||| |  || || ||||||||||||||||| || |||||    
T  6321133 ttgagccattcatcatagcaactaataggcatcttagtgtggttcaccctattcacaaacttctgcttccacattatcgtgacacaatgaacattaatgc 6321034  T
Q  266 acttgc 271  Q
    ||||||    
T  6321033 acttgc 6321028  T

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Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 265
Target Start/End: Complemental strand, 6409934 - 6409835
Alignment:
Q  166 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 265  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| ||||||||||| ||  |||  || ||||||||| |||||||||| || |||||    
T  6409934 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccctattcataaactattacttccacactatcgtaacacaatgaacataaatgc 6409835  T

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Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 268
Target Start/End: Complemental strand, 6362932 - 6362830
Alignment:
Q  166 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 265  Q
    ||||||||||| ||||||| ||||||||   ||| ||||||||||| ||||||||||| ||||| |  || || ||||||||||| ||||| || |||||    
T  6362932 ttgagccattcgtcatagcaacaaataggcatctaagtgtggttcaccctattcataaacttctgcttccacattatcgtgacacgatgaacataaatgc 6362833  T
Q  266 act 268  Q
    |||    
T  6362832 act 6362830  T

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Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 7471224 - 7471134
Alignment:
Q  166 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaa 256  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| | ||||||||| ||| |||  || |||||  |||||||||||||    
T  7471224 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccatattcataaacttttacttccacactactgtgacacaatgaa 7471134  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 274
Target Start/End: Complemental strand, 6450581 - 6450452
Alignment:
Q  145 ggttgaatacccattgcgtgattgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcg 244  Q
    |||||||||| |||   ||||| || |||||||||||||| |||||||||  ||| |||||  |||| || ||| |||||||| ||   || || || ||    
T  6450581 ggttgaatactcatgcagtgatggaaccattcatcatagcaacaaatagacatctaagtgtacttcacccgattaataagcttttattcccccattaccg 6450482  T
Q  245 tgacacaatgaatatcaatgcacttgctcg 274  Q
    ||||||||| |||||||||| |||||||||    
T  6450481 tgacacaataaatatcaatggacttgctcg 6450452  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 271
Target Start/End: Original strand, 36925655 - 36925758
Alignment:
Q  168 gagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgcac 267  Q
    |||||||||||||||||| |||||||  |||| |||||  |||| ||||||||||||||  |||| ||||||| ||||||||| |||||||| |||| ||    
T  36925655 gagccattcatcatagcttcaaataggcgtcttagtgtacttcaccctattcataagctattacatcctcactttcgtgacaccatgaatataaatggac 36925754  T
Q  268 ttgc 271  Q
    ||||    
T  36925755 ttgc 36925758  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 274
Target Start/End: Original strand, 9605567 - 9605696
Alignment:
Q  145 ggttgaatacccattgcgtgattgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcg 244  Q
    |||||||||| |||   ||| ||||||||||||||||||| ||||| |||  ||| |||||  |||| |||||| ||||| | ||| | || || |  ||    
T  9605567 ggttgaatactcatgcagtggttgagccattcatcatagcaacaaacagacatcttagtgttcttcaccctattaataagttgctagatccccatttccg 9605666  T
Q  245 tgacacaatgaatatcaatgcacttgctcg 274  Q
    ||||||||| |||||||| | |||||||||    
T  9605667 tgacacaataaatatcaacggacttgctcg 9605696  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 9605326 - 9605398
Alignment:
Q  75 acaatttggcaattggccaaggcgtatgtagttgtaaatgacgcctgctttcaccaactcatgagtcactggt 147  Q
    |||||||||| ||||||||||||  ||||| ||||||||||  | ||||  || ||||||||||| |||||||    
T  9605326 acaatttggctattggccaaggctcatgtaattgtaaatgattcatgctaccatcaactcatgagccactggt 9605398  T

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