View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21187_low_2 (Length: 936)
Name: NF21187_low_2
Description: NF21187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21187_low_2 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 272 - 918
Target Start/End: Original strand, 3467492 - 3468124
Alignment:
| Q |
272 |
gttaacaatgtaaattgttgaatgtctttaatcctttttcttgtcaccaatgtaaattgttgtcaaaatttgattgtcgaaatatcatttctcttgtcat |
371 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
3467492 |
gttaacaatgtaaattgttgaatgtctttaatcctttctcttgtcagcaatgtaaattgttgtcaaaat--------------atcatttctcttgtcat |
3467577 |
T |
|
| Q |
372 |
atacagtacacactccaaaaatggggaaaaatccttttctgaatatcatttgttttgaattcatataagnnnnnnntgataagtttaagctcaagttatt |
471 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
3467578 |
atacagtacacactccaaaaatggggtaaaatccttttctggatatcatttgttttgaattcacataagaaaaaa-tgataagtttaagctcaagttatt |
3467676 |
T |
|
| Q |
472 |
gacagtgtcgtattcctaaagcaatctacctcaactttttcacattcgaaccagtcnnnnnnntcatcaacattatccctctccctcaaagaataaaaac |
571 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3467677 |
gacagtgtcgtattcctaaagcaatctacctcaactttttcacattcgaaccagtcaaaaaaatcatcaacattatccctctccctcaaagaataaaaac |
3467776 |
T |
|
| Q |
572 |
aaaaagtcacattacttgatagcaggtagatattgtgcacaaatgctgcacataatcgaatagaaaaaagaaaattggtttctttacccatttgagaaca |
671 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3467777 |
aaaaagtcacattactagatagcaggtagatattgtgcacaaatgctgcacataatcgaatagaaaaaagaaaattggtttctttacccatttgagaaca |
3467876 |
T |
|
| Q |
672 |
aaaaacaaatcttgcttatgtaggcagaatatccgttttacctacatacatcacatgtgattcctcgagatgtgatagcaacctaagaattgttatttag |
771 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
3467877 |
aaaaacaaatcttgcttatgtaggcagaatatccgttttacctacatacatcacatgcgattccttgagatgtgatagcaacctaagaattattatttag |
3467976 |
T |
|
| Q |
772 |
ttgatgatgatgacatagtgagtgctatgctacactaa-acacatgtgtgttaggacattgatttcaagtgttctctgaaaattctcaacatactttgaa |
870 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3467977 |
ttgatgatgatgacatagtgagtgctatgctacactaacacatgtgtgtgttaggacattgatttcaagtgttctctgaaaattctcaacatactttgaa |
3468076 |
T |
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| Q |
871 |
aagtaacaatcccatacaaggtaccatcttcttgtaccacccagacat |
918 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3468077 |
aagtaacaatcccatacaaggtaccatcttcttgtaccacccagacat |
3468124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 225; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 13228046 - 13227794
Alignment:
| Q |
9 |
atctcgaagaaaataccaaacattcctcgttatttatatttattcttaagcaagtctccaaaagtgcttagttgagccatcatttctatttcgtctttcg |
108 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||| |
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| T |
13228046 |
atctccaaaaaaataccaaacattcctcgttatttatatttattcttaagcaagtcccaaaaagtccttagttgagccatcatttctatttcgtctttcg |
13227947 |
T |
|
| Q |
109 |
tttcgatagatatatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13227946 |
tttcgatagatatatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatag |
13227847 |
T |
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| Q |
209 |
atcctgctcatggattaacgaaaatgtgcagaagctctatttgcctctgccat |
261 |
Q |
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| T |
13227846 |
accctgctcatggattaacgaaaatgtgcaaaagctctatttgcctctgccat |
13227794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 137 - 261
Target Start/End: Original strand, 53883670 - 53883788
Alignment:
| Q |
137 |
ttctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatggattaacgaaaatgtg |
236 |
Q |
| |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||| |
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| T |
53883670 |
ttctttttctattgattcttttccaattat------ggatggatccatacataggtctatgtgtgtgtatagatcctgctcattgattaatgaaaatgtg |
53883763 |
T |
|
| Q |
237 |
cagaagctctatttgcctctgccat |
261 |
Q |
| |
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|| ||| |||||||||||||||||| |
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| T |
53883764 |
caaaagatctatttgcctctgccat |
53883788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 47522832 - 47522608
Alignment:
| Q |
9 |
atctcgaagaaaataccaaacattcctcgttatttatatttattcttaagcaagtctccaaaagtgcttagttgagccatcatttctatttcgtctttcg |
108 |
Q |
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||||| || |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47522832 |
atctccaaaaaaataccaaacattcctggttatttatatttattcttaagcaagtccccaaaagtgtttagttgagccatcatttctatttcgtctttcg |
47522733 |
T |
|
| Q |
109 |
tttcgatagatatatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatag |
208 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47522732 |
tttcgataaatatatcgattaattccgattctttttctatcgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtacatag |
47522633 |
T |
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| Q |
209 |
atcctgctcatggattaacgaaaat |
233 |
Q |
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||||| ||||||||||||||||||| |
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| T |
47522632 |
atcctactcatggattaacgaaaat |
47522608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 45 - 261
Target Start/End: Complemental strand, 42680336 - 42680126
Alignment:
| Q |
45 |
tatttattcttaagcaagtctccaaaagtgcttagttgagccatcatttctatttcgtctttcgtttcgatagatatatcgattaattccgattcttttt |
144 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42680336 |
tatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctattttgtctttcgtttccatagatatatcgattaattccgattcttttt |
42680237 |
T |
|
| Q |
145 |
ctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatggattaacgaaaatgtgcagaagct |
244 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
42680236 |
ctattgattcttttccaa------ttatgtatggatccatacataggtctacgtgtgtatatagatcctactcatggattaacgaaaatgtgcaaaagct |
42680143 |
T |
|
| Q |
245 |
ctatttgcctctgccat |
261 |
Q |
| |
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|||||||| |||||||| |
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| T |
42680142 |
ctatttgcttctgccat |
42680126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 45 - 166
Target Start/End: Original strand, 35934647 - 35934768
Alignment:
| Q |
45 |
tatttattcttaagcaagtctccaaaagt-gcttagttgagccatcatttctatttcgtctttcgtttcgatagatatatcgattaattccgattctttt |
143 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||||| |||||||| |||||||| |||||||||||||||||||||||| ||||||| |||| |||| |
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|
| T |
35934647 |
tatttattcttaagcaagtcctcaaaagttggttagttaagccatcaattctattt-gtctttcgtttcgatagatatatctattaattatgattatttt |
35934745 |
T |
|
| Q |
144 |
tctattgattcttttccaattat |
166 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
35934746 |
tctattgattcttttccaattat |
35934768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 192063 - 192007
Alignment:
| Q |
205 |
atagatcctgctcatggattaacgaaaatgtgcagaagctctatttgcctctgccat |
261 |
Q |
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|||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
192063 |
atagattctgttcatggattaacgaaaatgtgcaagagctctatttgcctctgccat |
192007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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