View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21187_low_20 (Length: 276)
Name: NF21187_low_20
Description: NF21187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21187_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 528607 - 528348
Alignment:
| Q |
1 |
attaatcatgacccccacggattcttttgaaccctcaagccttaatccacatgtgttgggaccattaccccttgggaaatacttcatgtattcctctcca |
100 |
Q |
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| T |
528607 |
attaatcatgaccaccacggattcttttgaaccctcaagccttaatccacatgtgttgggaccattaccccttgggaaatacttcatgtattcctctcca |
528508 |
T |
|
| Q |
101 |
ttgagaatctcagtcacatagttggtggggatccaaagagggggtccatatgtcctagccaatttggtcagttcatccattccaacaacagcaagctcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
528507 |
ttgagaatctcagtcacatagttggtggggatccaaagagggggtccatatgtcctagccaatttggtcagttcatccattccaacaacagcaagctcta |
528408 |
T |
|
| Q |
201 |
caatcttttgcttctcattaagacccttaatctgcactgaggagccaccaacgcttaaac |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
528407 |
caatcttttgcttctcattaagacccttaatctgcactgaggagccaccaacgcttaaac |
528348 |
T |
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