View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21187_low_23 (Length: 261)
Name: NF21187_low_23
Description: NF21187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21187_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 237
Target Start/End: Complemental strand, 8005419 - 8005195
Alignment:
| Q |
9 |
gaagaaaataagggaggcttatatatttttgtaaaatagagggggtatttgtgacataagagcatacctcaagggaggttaattattgtatttttcccta |
108 |
Q |
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| T |
8005419 |
gaagcaaataagggaggcttatgtatttttgtaaaatagagggggtatttgtgacataagagcatacctcaagggaggtta----ttgtatttttcccta |
8005324 |
T |
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| Q |
109 |
tattttatgcgacagagaatatttattaagatacctaaagtgacttggaggaagtaaatgagaggagacacatagttaactagtgattgaggcatattaa |
208 |
Q |
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| T |
8005323 |
tattttatgcgacagagaatatttattaagatacctaaagtgacttggaggaattaaatgagaggagacacatagttaaccagtaattgacgcatattaa |
8005224 |
T |
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| Q |
209 |
aagatgaagtagttaagactaaggtcatg |
237 |
Q |
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| T |
8005223 |
aagatgaagtagttaagactaaggtcatg |
8005195 |
T |
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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 33733137 - 33733209
Alignment:
| Q |
34 |
tttttgtaaaatagagggggtatttgtgacataagagcatacctcaagggaggttaattattgtatttttccctata |
110 |
Q |
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| T |
33733137 |
tttttgtaaaatagaggaggtatttgtgacgtaagagcatacctcaagcaagg----ttattgtatttttccctata |
33733209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 9748245 - 9748315
Alignment:
| Q |
34 |
tttttgtaaaatagagggggtatttgtgacataagagcatacctcaagggaggttaattattgtatttttcccta |
108 |
Q |
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||||||||||||||||||||| | |||||| ||| ||||||||| |||||| |||||||||||||||||| |
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| T |
9748245 |
tttttgtaaaatagagggggtgtcattgacattagaacatacctcaggggagg----ttattgtatttttcccta |
9748315 |
T |
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