View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21187_low_25 (Length: 250)
Name: NF21187_low_25
Description: NF21187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21187_low_25 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 39741488 - 39741251
Alignment:
| Q |
16 |
atactaacttgaacgttaaaaatgtttatagatacatttacattatacgtatcaatgatgtggatttcgaccaaacaccactattcaagaatgagttcca |
115 |
Q |
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| T |
39741488 |
atactaacttgaatgttaaaa-tgtttatagatacatttacattatacgtatcaatgatgtggacttcgaccaaacaccactattcaagaatgagttcca |
39741390 |
T |
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| Q |
116 |
aatcattctagaagtgtccgtgattgtatttttgctataattagcatttctctatgattagatggcccttgttttgaggcttgaagttgcttacttctaa |
215 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39741389 |
aatcattctagaagtgtctgtgattgtatttttgctataattagcatttctctatgattagatgtcccttgttttgaggcttgaagttgcttacttctaa |
39741290 |
T |
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| Q |
216 |
ctttaacttcttgaat----ctaatctaaacttttgtat |
250 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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| T |
39741289 |
ctttaacttcttgaatataaataatctaaacttttgtat |
39741251 |
T |
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