View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21187_low_26 (Length: 250)
Name: NF21187_low_26
Description: NF21187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21187_low_26 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 2625296 - 2625059
Alignment:
| Q |
13 |
aaaatacataaaatttgaaaacacattggtattacatcaaatattcaaatggaaccaatcaatccaaactcaactaatctactggaaagttcttcagtgc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2625296 |
aaaatacataaaatttgaaaacacattggtattacatcaaatattcaaatggaaccaatcaatccaaactcaactaatctactggaaagttcttcactgc |
2625197 |
T |
|
| Q |
113 |
ttatacgatctacactgaaagctcaataattaatcaaaacccaaatttgcatgatgcaaattccaatgagtagtcatccaaacttaagtcaagctgctat |
212 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2625196 |
ttatatgatctccactgaaagctcaataattaatcaaaacccaaatttgcatgatgcaaattccaacgagtagtcatccaaacttaagtcaagctgctat |
2625097 |
T |
|
| Q |
213 |
ccaatggtattgttgttaggatattgtcctttgctgac |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2625096 |
ccaatggtattgttgttaggatattgtcctttgctgac |
2625059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University