View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21187_low_29 (Length: 242)
Name: NF21187_low_29
Description: NF21187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21187_low_29 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 35051044 - 35051262
Alignment:
| Q |
1 |
ctggtaaaaagatgatagcattatccttcatataaaagtgcaagtaattaccagatgaaacagtgaagatctatcaaattaatcagaaggaataacagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
35051044 |
ctggtaaaaagatgatagcattatccttcatataaaagtgcaagtaattaccagatgaaacagtgaagatctatcaaattaatcagaa-----atcagaa |
35051138 |
T |
|
| Q |
101 |
attaacatggtatttagatgtgatccaatgaccctccttttatttttcaatttatacattctgttagatgattatatactttattttattcatgatagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35051139 |
attaacatggtatttagatgtgatccaatgaccctccttttatttttcaatttatacattctgttagatgattatatactttattttattcatgatagaa |
35051238 |
T |
|
| Q |
201 |
aagaaaatgattatatacattctt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
35051239 |
aagaaaatgattatatacattctt |
35051262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University