View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21187_low_3 (Length: 654)
Name: NF21187_low_3
Description: NF21187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21187_low_3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 10 - 633
Target Start/End: Original strand, 5180819 - 5181442
Alignment:
| Q |
10 |
aagaaaatattattttttaacgataataagagactttaaataaaatgaaaaagtggttatgaatcattggtaggaattgaaattaattaacaaaagcttt |
109 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5180819 |
aagaaaatattaatttttaacgataataagaaactttaaataaaatgaaaaactggttatgaatcattggtaggaattgaaattaattaacaaaagcttt |
5180918 |
T |
|
| Q |
110 |
tcatcagaaggaaagaaattggaataaaaagtgaatgcaatacttgtttgcacacttaaaactactcatcattatgtttattgttcaaggattttcgaga |
209 |
Q |
| |
|
|||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
5180919 |
tcattaggaggaaagaaatcggaataaaaagtgaatgcaatacttgtttgcacacttaaaactactcatcattatgtatattgttcaaggattttcgaga |
5181018 |
T |
|
| Q |
210 |
tcaaaggagttgaaggtcttagacctttcccaaaataggctaaactgcaacatcataacaaatttacatggtttcatatcattaaggagtttgattctaa |
309 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||||||||| || |||||||||||| ||| ||| ||||| |||| ||||||||||||||||||||||| |
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|
| T |
5181019 |
tcaaaggagttggaagtcttagacctttcaggaaataggctgaattgcaacatcatatcaagtttgcatggattcacatcattaaggagtttgattctaa |
5181118 |
T |
|
| Q |
310 |
gtgataacgagttcaattgttctctctccactttaggtacgcatcttcaattattatattatggcaaatgtttttagtttcattttttaaaaagaactat |
409 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| ||||| ||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| |
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|
| T |
5181119 |
gtgataacaagttcaattgttctttctccactttcggtacacatcttcaattcttatattatgatgaatgtttttattttcattttttaaaaagaactat |
5181218 |
T |
|
| Q |
410 |
attatgtccttgctacagattttgccaaatttagtcggctagaactattggacttgagtatcaataaatttggtggttctctacatgtggaaggtacctg |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
5181219 |
attatgtccttgctacagattttgccaaatttagtcggctagaactattggacttgagtatcaatggatttggtggttctctacatgtggaaggtacctg |
5181318 |
T |
|
| Q |
510 |
tactattattattgttgtttgttannnnnnngggcacaacagatatataatgtcactctccacacaatactctttagacactgtggagcctttagcttcc |
609 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
5181319 |
tactattattattgttgtttgttatttttttgggcacagcagatatataatgtcactctccacacaatactctttagacactgtggagccttgagcttcc |
5181418 |
T |
|
| Q |
610 |
ataaatttttccacaaacctgcat |
633 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
5181419 |
ataaatttttccacaaacctgcat |
5181442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 178 - 525
Target Start/End: Complemental strand, 4844121 - 4843776
Alignment:
| Q |
178 |
tcattatgtttattgttcaaggattttcgagatcaaaggagttgaaggtcttagacctttcccaaaataggctaaactgcaacatcataacaaatttaca |
277 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||| | ||| |||||||||||| |||||||||| ||| || |
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|
| T |
4844121 |
tcattatgtatattgttgaaggattttcgagatcaaaggagttggaggtcttagacctttcctataatgagctaaactgcaatatcataacaagtttgca |
4844022 |
T |
|
| Q |
278 |
tggtttcatatcattaaggagtttgattctaagtgataacgagttcaattgttctctctccactttaggtacgcatcttcaattattatattatggcaaa |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4844021 |
tggtttcatatcattaaggagtttgattctaaatgataacgagttcaattgttctctctccactttaggtacgcatcttcaattattatattatggcaaa |
4843922 |
T |
|
| Q |
378 |
tgtttttagtttcattttttaaaaagaactatattatgtccttgctacagattttgccaaatttagtcggctagaactattggacttgagtatcaataaa |
477 |
Q |
| |
|
|||||||||||||| ||||||||| || ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| || ||| || |
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|
| T |
4843921 |
tgtttttagtttca--ttttaaaaaaaaaaatattatgtccttgcaacagattttgccaaatttagtcagctagaactattggacttgggtggtaatcaa |
4843824 |
T |
|
| Q |
478 |
tttggtggttctctacatgtggaaggtacctgtactattattattgtt |
525 |
Q |
| |
|
||| |||||| |||||||| |||||||| | |||||||||| ||||| |
|
|
| T |
4843823 |
tttattggttcactacatgttgaaggtacttttactattatttttgtt |
4843776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 178 - 525
Target Start/End: Original strand, 5171554 - 5171898
Alignment:
| Q |
178 |
tcattatgtttattgttcaaggattttcgagatcaaaggagttgaaggtcttagacctttcccaaaataggctaaactgcaacatcataacaaatttaca |
277 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |||||||||| ||| | |
|
|
| T |
5171554 |
tcattatgtatattgttgaaggattttcgagatcaaaggagttggaggtcttagacctttcccataatgagctaaactgcaatatcataacaagtttgta |
5171653 |
T |
|
| Q |
278 |
tggtttcatatcattaaggagtttgattctaagtgataacgagttcaattgttctctctccactttaggtacgcatcttcaattattatattatggcaaa |
377 |
Q |
| |
|
|||||||||||||||||||||||||||| | || |||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
5171654 |
tggtttcatatcattaaggagtttgattttgagagataacaagttcaattgttctctctccactttaggtacgcatcttcaaataatatattatggcaaa |
5171753 |
T |
|
| Q |
378 |
tgtttttagtttcattttttaaaaagaactatattatgtccttgctacagattttgccaaatttagtcggctagaactattggacttgagtatcaataaa |
477 |
Q |
| |
|
||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||| || |
|
|
| T |
5171754 |
tgtttttagtttcattt---aaaaaaaaaagtattatgtccttgcaacagattttgccaaatttagtcggctagaactattggacttggatggtaatcaa |
5171850 |
T |
|
| Q |
478 |
tttggtggttctctacatgtggaaggtacctgtactattattattgtt |
525 |
Q |
| |
|
||| |||||| |||||||| |||||||| | |||||||||| ||||| |
|
|
| T |
5171851 |
tttattggttcactacatgttgaaggtacttttactattatttttgtt |
5171898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 188 - 525
Target Start/End: Original strand, 5194194 - 5194531
Alignment:
| Q |
188 |
tattgttcaaggattttcgagatcaaaggagttgaaggtcttagacctttcccaaaataggctaaactgcaacatcataacaaatttacatggtttcata |
287 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | |||||||||||||| |||||||||||| |||||||| ||||||| ||| ||||| |||| | |
|
|
| T |
5194194 |
tattgttgaaggattttcgagatcaaaggagttggaagtcttagacctttcaggaaataggctaaattgcaacataataacaagtttgcatggattcaca |
5194293 |
T |
|
| Q |
288 |
tcattaaggagtttgattctaagtgataacgagttcaattgttctctctccactttaggtacgcatcttcaattattatattatggcaaatgtttttagt |
387 |
Q |
| |
|
|||||||||||||||||||| ||| | ||| | |||||||||||||||||||||||||||| ||||||||||| |||||||||| | |||| ||||| | |
|
|
| T |
5194294 |
tcattaaggagtttgattctgagttacaacaacttcaattgttctctctccactttaggtaaacatcttcaattcttatattatgacgaatgattttatt |
5194393 |
T |
|
| Q |
388 |
ttcattttttaaaaagaactatattatgtccttgctacagattttgccaaatttagtcggctagaactattggacttgagtatcaataaatttggtggtt |
487 |
Q |
| |
|
|||||| |||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||| ||||| ||||| |
|
|
| T |
5194394 |
atcatttattaaaaagaaataaattatgtccttgcaacagattttgccaaatttagtcggctagaactattggacttgggtggtaatcaatttactggtt |
5194493 |
T |
|
| Q |
488 |
ctctacatgtggaaggtacctgtactattattattgtt |
525 |
Q |
| |
|
|||||||||| |||||||| | |||| ||||| ||||| |
|
|
| T |
5194494 |
ctctacatgttgaaggtacttttactgttattgttgtt |
5194531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 178 - 519
Target Start/End: Original strand, 5154960 - 5155300
Alignment:
| Q |
178 |
tcattatgtttattgttcaaggattttcgagatcaaaggagttgaaggtcttagacctttcccaaaataggctaaactgcaacatcataacaaatttaca |
277 |
Q |
| |
|
||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||| | ||| |||| |||||||| |||||||||| ||| || |
|
|
| T |
5154960 |
tcattatgtatattgttgaaggatttttgagatcaaaggagttggaggtcttagacctttcctataatgggctgaactgcaatatcataacaagtttgca |
5155059 |
T |
|
| Q |
278 |
tggtttcatatcattaaggagtttgattctaagtgataacgagttcaattgttctctctccactttaggtacgcatcttcaattattatattatggcaaa |
377 |
Q |
| |
|
||| |||| ||||||||||||||||||||| || | ||| | ||||||||||||||||||||||||||||| ||||||||||| |||||||||| || |
|
|
| T |
5155060 |
tggattcacatcattaaggagtttgattctgagatacaacaacttcaattgttctctctccactttaggtacacatcttcaattcttatattatgatgaa |
5155159 |
T |
|
| Q |
378 |
tgtttttagtttcattttttaaaaagaactatattatgtccttgctacagattttgccaaatttagtcggctagaactattggacttgagtatcaataaa |
477 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||| | ||||||||||| ||||||| |||||||||||||||||||||| | ||| || |
|
|
| T |
5155160 |
tgtttttattttca-tttttaaaaagaactatattatgtcctttcaacagattttgctaaatttaatcggctagaactattggacttggatggtaatcaa |
5155258 |
T |
|
| Q |
478 |
tttggtggttctctacatgtggaaggtacctgtactattatt |
519 |
Q |
| |
|
|| |||||| |||||||| |||||||| | |||||||||| |
|
|
| T |
5155259 |
ttgattggttcactacatgttgaaggtacttttactattatt |
5155300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 5171451 - 5171557
Alignment:
| Q |
7 |
tcgaagaaaatattattttttaacgataataagagactttaaataaaatgaaaaagtggttatgaatcattggtaggaattgaaattaattaacaaaagc |
106 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5171451 |
tcgaagaaaatattaatttttaacgataataagagactttaaataaaatgaaaaactggttatgaatcattggtaggaattgaaattaattaacaaaagc |
5171550 |
T |
|
| Q |
107 |
ttttcat |
113 |
Q |
| |
|
||||||| |
|
|
| T |
5171551 |
ttttcat |
5171557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 4844221 - 4844118
Alignment:
| Q |
10 |
aagaaaatattattttttaacgataataagagactttaaataaaatgaaaaagtggttatgaatcattggtaggaattgaaattaattaacaaaagcttt |
109 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4844221 |
aagaaaatattaatttttaacgatgataagagactttaaataaaatgaaaaagtggttatgaatcattggtaggaattgaaattaattaacaaaagcttt |
4844122 |
T |
|
| Q |
110 |
tcat |
113 |
Q |
| |
|
|||| |
|
|
| T |
4844121 |
tcat |
4844118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 5194081 - 5194183
Alignment:
| Q |
10 |
aagaaaatattattttttaacgataataagagactttaaataaaatgaaaaagtggttatgaatcattggtaggaattgaaattaattaacaaaagcttt |
109 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5194081 |
aagaaaatataatttt-taacgataataagagactttaaataaaatgaaaaagtggttatgaatcatcggtaggaattgaaattaattaacaaaagcttt |
5194179 |
T |
|
| Q |
110 |
tcat |
113 |
Q |
| |
|
|||| |
|
|
| T |
5194180 |
tcat |
5194183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 5154863 - 5154963
Alignment:
| Q |
13 |
aaaatattattttttaacgataataagagactttaaataaaatgaaaaagtggttatgaatcattggtaggaattgaaattaattaacaaaagcttttca |
112 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5154863 |
aaaatattaattattaacgataataagagactttaaataaaatgaaaaactggttataaatcattggtaggaattgaaattaattaacaaaagcttttca |
5154962 |
T |
|
| Q |
113 |
t |
113 |
Q |
| |
|
| |
|
|
| T |
5154963 |
t |
5154963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 563 - 633
Target Start/End: Complemental strand, 4843444 - 4843374
Alignment:
| Q |
563 |
cactctccacacaatactctttagacactgtggagcctttagcttccataaatttttccacaaacctgcat |
633 |
Q |
| |
|
||||||||||| |||||||||| ||||| | | ||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
4843444 |
cactctccacataatactctttgcacactctagcgcctttagcttccataaatatttcgacaaacctgcat |
4843374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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