View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21187_low_30 (Length: 236)
Name: NF21187_low_30
Description: NF21187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21187_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 2624958 - 2624860
Alignment:
| Q |
1 |
caggaatggtttgaatgtcaacaacaatgcaagtccttcaataacattgagcacaaagaacaccagatgggggcctgcagttgaatgttcaacagtgag |
99 |
Q |
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| T |
2624958 |
caggaatggtttgaatgtcaataacaatgcaagtccttcaataacattgagcacaaagaacaccagatgggggcctgcaattgaatgttcaacagtgag |
2624860 |
T |
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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 2624859 - 2624792
Alignment:
| Q |
153 |
ctagtttataaatttttagcattgacaccttcaattgaaggcatgccaagtgtagggcacgtgtcaat |
220 |
Q |
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| T |
2624859 |
ctagtttataaatatttagcattgacaccttcaattgaaggcatgccaagtgtcgggcacgtgtcaat |
2624792 |
T |
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