View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21187_low_34 (Length: 203)
Name: NF21187_low_34
Description: NF21187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21187_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 12276893 - 12277057
Alignment:
| Q |
19 |
atacaacaagggccggatatacccggacgcccaaaaccaccaaccaccaaaggcgaaaaatgaaaaaccacacacaactcccacagatgacagaagttac |
118 |
Q |
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| T |
12276893 |
atacaacaagggccggatatacccggacgcccaaaaccaccaaccgccaaacgcgaaaaacgaaaaaccacacacaactcccacagatgacagaagttat |
12276992 |
T |
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| Q |
119 |
ggccctgcaattcggaaaaccataccaaatttcagaggcatagctaacccacccaaaacactgac |
183 |
Q |
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| T |
12276993 |
ggccctgcaatttggaaaaccataccaaatttcagaggcatagctaacccacccaaaacactgac |
12277057 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 22068714 - 22068782
Alignment:
| Q |
103 |
agatgacagaagttacggccctgcaattcggaaaaccataccaaatttcagaggcatagctaacccaccc |
172 |
Q |
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| T |
22068714 |
agatgacagaagttatggccctgcaattcagcaacaca-accaaatttcagagacatagctaacccaccc |
22068782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 8721278 - 8721210
Alignment:
| Q |
103 |
agatgacagaagttacggccctgcaattcggaaaaccataccaaatttcagaggcatagctaacccaccc |
172 |
Q |
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| T |
8721278 |
agatgacagaagttatggccctgcaattcagcaacaca-accaaatttcagagacatagctaaaccaccc |
8721210 |
T |
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