View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21187_low_6 (Length: 483)

Name: NF21187_low_6
Description: NF21187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21187_low_6
NF21187_low_6
[»] chr8 (1 HSPs)
chr8 (1-483)||(6434204-6434682)


Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Original strand, 6434204 - 6434682
Alignment:
Q  1 atttcttttggttgattgtttaaaatgtgttttatggacacaagtgaacaaaacttcttaaaataaagaatgggaaaaatgtgatttaatcatggaggac 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6434204 atttctattggttgattgtttaaaatgtgttttatggacacaagtgaacaaaacttcttaaaataaagaatgggaaaaatgtgatttaatcatggaggac 6434303  T
Q  101 cataattgttactatatgtgatgacaggcaacgttccagatgaagaaaatttcaaatatagaataacttataaaaatggggcaacgtgcttcgcgaggag 200  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6434304 cataattgtta---tatgtgatgacaggcaacgttccagatgaagaaaatttgaaatatagaataacttataaaaatggggcaacgtgcttcgcgaggag 6434400  T
Q  201 gaattttataataatatgattccttcaagagcagatagagttactatgatgacataatgatagcatcaaa-nnnnnnnncttaaccaaaatgactttcaa 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||     
T  6434401 gaattttataataatatgattccttcaagagcagatagagttactatgatgacataatgatagcatcaaagttttttttcttaaccaaaatgactttca- 6434499  T
Q  300 tatagcttcaagttaatttcgttcgtaaaagaaagcttaagattaatcttttattgtatgaaaaaatgacatcaagctttttgatgcttgacataaatcg 399  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6434500 -atagcttcaagttaatttcgttcgtaaaagaaagcttaagattaatcttttattgtatgaaaaaatgacatcaagctttttgatgcttgacataaatcg 6434598  T
Q  400 gtcacaataccacacacgctatcaccaccaccactcaccatgttgaaggtaggcaccgcgacgggatgtagacggtttttgctt 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  6434599 gtcacaataccacacacgctatcaccaccaccactcaccatgttgaaggtaggcaccgcaacgggatgtaaacggtttttgctt 6434682  T

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