View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21187_low_7 (Length: 470)

Name: NF21187_low_7
Description: NF21187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21187_low_7
NF21187_low_7
[»] chr3 (23 HSPs)
chr3 (6-141)||(10339986-10340121)
chr3 (20-148)||(10301827-10301956)
chr3 (220-456)||(10339707-10339939)
chr3 (220-456)||(10301535-10301765)
chr3 (39-144)||(44603055-44603161)
chr3 (39-144)||(10300936-10301043)
chr3 (39-133)||(53194635-53194730)
chr3 (39-146)||(7271605-7271712)
chr3 (39-109)||(7270320-7270390)
chr3 (40-114)||(44601647-44601721)
chr3 (220-300)||(47766822-47766901)
chr3 (41-144)||(10338736-10338841)
chr3 (39-112)||(48084999-48085072)
chr3 (43-112)||(54108540-54108609)
chr3 (54-148)||(48083239-48083334)
chr3 (266-304)||(14744275-14744313)
chr3 (39-89)||(53193093-53193143)
chr3 (275-304)||(53809363-53809392)
chr3 (68-96)||(3208510-3208538)
chr3 (56-96)||(50809435-50809475)
chr3 (56-96)||(50810896-50810936)
chr3 (56-96)||(50864928-50864968)
chr3 (56-96)||(50866387-50866427)
[»] chr7 (26 HSPs)
chr7 (39-144)||(9081390-9081496)
chr7 (43-143)||(3332171-3332272)
chr7 (39-148)||(3330689-3330799)
chr7 (39-144)||(44376701-44376807)
chr7 (39-144)||(44385568-44385674)
chr7 (220-304)||(17288107-17288192)
chr7 (40-144)||(44372727-44372832)
chr7 (40-144)||(44381583-44381688)
chr7 (53-148)||(29589279-29589375)
chr7 (40-112)||(48312699-48312771)
chr7 (40-144)||(16755869-16755974)
chr7 (39-112)||(48312021-48312094)
chr7 (220-304)||(41515162-41515245)
chr7 (56-94)||(41078770-41078808)
chr7 (53-96)||(32256457-32256500)
chr7 (53-100)||(40811351-40811398)
chr7 (269-316)||(44376587-44376633)
chr7 (269-316)||(44385454-44385500)
chr7 (419-453)||(7313818-7313852)
chr7 (266-304)||(35296684-35296722)
chr7 (56-94)||(41079898-41079936)
chr7 (56-97)||(35154-35195)
chr7 (269-298)||(3330905-3330934)
chr7 (39-96)||(16757421-16757478)
chr7 (267-300)||(45089669-45089702)
chr7 (53-94)||(47456439-47456480)
[»] chr4 (26 HSPs)
chr4 (39-144)||(4871491-4871597)
chr4 (39-144)||(23104020-23104126)
chr4 (40-128)||(4872260-4872349)
chr4 (39-144)||(45535043-45535149)
chr4 (40-144)||(44498458-44498563)
chr4 (42-149)||(44499992-44500100)
chr4 (41-139)||(19750311-19750410)
chr4 (41-139)||(19789396-19789495)
chr4 (39-148)||(56085344-56085454)
chr4 (220-304)||(46795893-46795976)
chr4 (220-300)||(47667344-47667423)
chr4 (222-300)||(38554097-38554174)
chr4 (39-96)||(49895037-49895094)
chr4 (269-316)||(44499839-44499885)
chr4 (78-144)||(1519847-1519914)
chr4 (78-148)||(1521203-1521274)
chr4 (275-316)||(4872090-4872130)
chr4 (39-112)||(56086597-56086670)
chr4 (50-94)||(6349617-6349661)
chr4 (270-304)||(307668-307702)
chr4 (266-300)||(29665445-29665479)
chr4 (419-453)||(31183147-31183181)
chr4 (50-96)||(42872361-42872407)
chr4 (269-299)||(52137643-52137673)
chr4 (53-94)||(27850996-27851037)
chr4 (54-94)||(6348167-6348207)
[»] chr2 (12 HSPs)
chr2 (39-144)||(23233709-23233815)
chr2 (40-112)||(23231538-23231610)
chr2 (268-317)||(19397746-19397795)
chr2 (50-96)||(28562871-28562917)
chr2 (56-96)||(2277531-2277571)
chr2 (50-94)||(11317432-11317476)
chr2 (269-299)||(4920044-4920074)
chr2 (419-453)||(34387324-34387358)
chr2 (50-96)||(42641922-42641968)
chr2 (269-299)||(45699746-45699776)
chr2 (50-94)||(32469156-32469200)
chr2 (56-96)||(34147150-34147190)
[»] chr1 (20 HSPs)
chr1 (42-148)||(9226224-9226331)
chr1 (39-144)||(27556267-27556373)
chr1 (40-148)||(6049433-6049542)
chr1 (220-317)||(40533454-40533551)
chr1 (78-144)||(5613098-5613165)
chr1 (78-144)||(26286448-26286515)
chr1 (78-148)||(26287793-26287864)
chr1 (39-144)||(3617510-3617616)
chr1 (39-148)||(6047916-6048025)
chr1 (34-148)||(3615239-3615354)
chr1 (220-291)||(48528773-48528843)
chr1 (269-315)||(27557543-27557591)
chr1 (42-148)||(52076531-52076638)
chr1 (414-453)||(52143589-52143628)
chr1 (269-299)||(51446712-51446742)
chr1 (56-97)||(20064190-20064231)
chr1 (39-96)||(52078156-52078213)
chr1 (53-94)||(52627526-52627567)
chr1 (56-96)||(41874033-41874073)
chr1 (50-94)||(50444762-50444806)
[»] chr8 (27 HSPs)
chr8 (39-148)||(10667966-10668076)
chr8 (220-304)||(38150-38234)
chr8 (43-128)||(7844712-7844798)
chr8 (43-144)||(24192676-24192778)
chr8 (40-144)||(39174740-39174845)
chr8 (39-138)||(32552293-32552393)
chr8 (39-138)||(39173113-39173213)
chr8 (42-144)||(10669458-10669561)
chr8 (40-138)||(32553926-32554025)
chr8 (43-138)||(35800998-35801094)
chr8 (43-149)||(24191378-24191485)
chr8 (269-316)||(24191593-24191639)
chr8 (39-144)||(35799449-35799554)
chr8 (268-317)||(42793915-42793964)
chr8 (266-316)||(10668168-10668216)
chr8 (414-453)||(24305957-24305996)
chr8 (266-304)||(45395883-45395921)
chr8 (56-96)||(38697068-38697108)
chr8 (419-453)||(39581578-39581612)
chr8 (220-253)||(24068484-24068517)
chr8 (53-94)||(32798596-32798637)
chr8 (275-304)||(36757102-36757131)
chr8 (56-96)||(17702337-17702377)
chr8 (56-96)||(28418820-28418860)
chr8 (56-96)||(28420236-28420276)
chr8 (40-112)||(35070703-35070775)
chr8 (220-252)||(39516415-39516447)
[»] chr5 (11 HSPs)
chr5 (42-144)||(9220473-9220576)
chr5 (266-300)||(224458-224492)
chr5 (266-304)||(5975966-5976004)
chr5 (56-96)||(32757839-32757879)
chr5 (223-253)||(4124929-4124959)
chr5 (56-93)||(34894163-34894200)
chr5 (54-94)||(325249-325289)
chr5 (272-308)||(13519688-13519724)
chr5 (56-96)||(34899013-34899053)
chr5 (266-316)||(36898163-36898209)
chr5 (424-456)||(36898322-36898354)
[»] chr6 (4 HSPs)
chr6 (39-143)||(18240397-18240502)
chr6 (39-147)||(18242320-18242428)
chr6 (50-94)||(15730094-15730138)
chr6 (56-96)||(232190-232230)
[»] scaffold1251 (1 HSPs)
scaffold1251 (56-96)||(1147-1187)
[»] scaffold0031 (1 HSPs)
scaffold0031 (53-94)||(125297-125338)


Alignment Details
Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 10340121 - 10339986
Alignment:
Q  6 aggagcagagatctggattaggtagttttattgaggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaa 105  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10340121 aggaccagtgatctagattaggtagttttattgaggctaaattaattcaatggtccctcaactaatttccatttttcattttggtctcatatttcttaaa 10340022  T
Q  106 atcatcaattggtccttcaacttttgctccgttagt 141  Q
    ||||||||||||||||||||||||||||||||||||    
T  10340021 atcatcaattggtccttcaacttttgctccgttagt 10339986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 10301956 - 10301827
Alignment:
Q  20 ggattaggtagttttattgaggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatcaat-tggt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||    
T  10301956 ggattaggtagttttattgaggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccataagtcttaaaatcatcaatatggt 10301857  T
Q  119 ccttcaacttttgctccgttagtcaatttg 148  Q
    ||||||||||||||||||||||||||||||    
T  10301856 ccttcaacttttgctccgttagtcaatttg 10301827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 220 - 456
Target Start/End: Complemental strand, 10339939 - 10339707
Alignment:
Q  220 atgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctcatatctatatcaacatttcta 319  Q
    ||||||||||||||||| ||||||||||||||||||||        |||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  10339939 atgtccattgtatttaacagtgaaccgtcagcacataattttttt-cacttttcatcatcttctctcttcttc---ctcatatctatatcaacatttcta 10339844  T
Q  320 gannnnnnnnctttccaaaatacaaatccaaagacacaacacaannnnnnncctttccagatttccttactcttcttctccataacnnnnnnnnctagaa 419  Q
    ||        ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| ||||||||          ||||||    
T  10339843 gattttttttctttccaaaatacaaatccaaagacacaacacaatttttttcctttccagatttccttactcttcctctccatattttttttttctagaa 10339744  T
Q  420 ttctttcactcttcttctctcaacacaacacaaatcc 456  Q
    |||||||||||||||||||||||||||||||||||||    
T  10339743 ttctttcactcttcttctctcaacacaacacaaatcc 10339707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 220 - 456
Target Start/End: Complemental strand, 10301765 - 10301535
Alignment:
Q  220 atgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctcatatctatatcaacatttcta 319  Q
    ||||||||||||||||| |||||||| |||||||||||        |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10301765 atgtccattgtatttaacagtgaaccatcagcacataattttttt-cacttt-catcatcttctctcttcttcttcctcatatctatatcaacatttcta 10301668  T
Q  320 gannnnnnnnctttccaaaatacaaatccaaagacacaacacaannnnnnncctttccagatttccttactcttcttctccataacnnnnnnnnctagaa 419  Q
    ||        |||||||||||||||||| |||||||||||||||       |||||||||||||||||||   ||||||||||||         ||||||    
T  10301667 gattttttttctttccaaaatacaaatctaaagacacaacacaatttttttcctttccagatttccttac---tcttctccataa-ttttttttctagaa 10301572  T
Q  420 ttctttcactcttcttctctcaacacaacacaaatcc 456  Q
    |||||||||||||||||||||||||||||||||||||    
T  10301571 ttctttcactcttcttctctcaacacaacacaaatcc 10301535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 44603161 - 44603055
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatcaattg-gtccttcaacttttgctccgt 137  Q
    |||||||||||||| |||||||||||||||||||| || |||| ||||||||||||||  ||||||||| |||||| | |||| ||||||||||||||||    
T  44603161 aggctaaattaattaaatggtccctcaactaattttcagtttttattttggtcccataaatcttaaaataatcaatcgagtccctcaacttttgctccgt 44603062  T
Q  138 tagtcaa 144  Q
    || ||||    
T  44603061 tattcaa 44603055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 10300936 - 10301043
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaa-tttccatttttcattttggtcccatatttcttaaaatcatcaat-tggtccttcaacttttgctccg 136  Q
    ||||||||||||||||||||||||| |||||| ||| || ||||||||||||| |||||  |||||||||||||||| |||||| ||||| |||||||||    
T  10300936 aggctaaattaattcaatggtcccttaactaatttttcagttttcattttggttccataaatcttaaaatcatcaatctggtccctcaacgtttgctccg 10301035  T
Q  137 ttagtcaa 144  Q
    ||| ||||    
T  10301036 ttattcaa 10301043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 53194730 - 53194635
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgct 133  Q
    ||||||||||||| |||||||||||||||||||| ||| ||||||||||||| |||||  | ||||||||||||  ||||||||||||||||||||    
T  53194730 aggctaaattaatccaatggtccctcaactaattaccagttttcattttggttccataagttttaaaatcatcattttggtccttcaacttttgct 53194635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 146
Target Start/End: Complemental strand, 7271712 - 7271605
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgt 137  Q
    ||||||||||||| |||||||||||||||||||||||| |||| |||||  || ||||  | ||||||||| ||  ||||||||| ||||||||||||||    
T  7271712 aggctaaattaatccaatggtccctcaactaatttccaatttttattttaatctcataagttttaaaatcagcatgttggtcctt-aacttttgctccgt 7271614  T
Q  138 tagtcaatt 146  Q
    || ||||||    
T  7271613 tattcaatt 7271605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 7270320 - 7270390
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatca 109  Q
    |||||||||||||  |||| |||||||||||||||||| |||||||||| ||||||||  |||||||||||    
T  7270320 aggctaaattaatcaaatgatccctcaactaatttccagttttcatttttgtcccataagtcttaaaatca 7270390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 44601647 - 44601721
Alignment:
Q  40 ggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatcaat 114  Q
    ||||||||||||  |||||||||||||||||||  || |||||||||| ||| ||||  ||||||||||||||||    
T  44601647 ggctaaattaatcaaatggtccctcaactaattctcagttttcattttagtctcataagtcttaaaatcatcaat 44601721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 300
Target Start/End: Complemental strand, 47766901 - 47766822
Alignment:
Q  220 atgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctcat 300  Q
    ||||||||||||| |||||||||||||||||||| |||        ||||||| ||||||||||||||||||||| |||||    
T  47766901 atgtccattgtatctaatagtgaaccgtcagcacctaa-tttttttcacttttgatcatcttctctcttcttctttctcat 47766822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 10338736 - 10338841
Alignment:
Q  41 gctaaattaattcaatggtccctcaactaatttcc-atttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgtt 138  Q
    |||||| |||||||||||||||| || ||||||   | |||||||||||||||||||  | ||||||||||||  ||||||| ||||| |||||||| ||    
T  10338736 gctaaaataattcaatggtcccttaattaattttttagttttcattttggtcccataaattttaaaatcatcattttggtccctcaacgtttgctccctt 10338835  T
Q  139 agtcaa 144  Q
    | ||||    
T  10338836 attcaa 10338841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 48085072 - 48084999
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca 112  Q
    |||||||||||||  |||||||||||||||||||  || |||| ||||||||| | ||  ||||||||||||||    
T  48085072 aggctaaattaatcaaatggtccctcaactaattctcagtttttattttggtctcttaagtcttaaaatcatca 48084999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 54108540 - 54108609
Alignment:
Q  43 taaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca 112  Q
    ||||||||  ||||||||||||||||||||  || ||||| |||||||||||||  ||||||||| ||||    
T  54108540 taaattaacccaatggtccctcaactaattctcagttttcgttttggtcccataagtcttaaaattatca 54108609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 48083239 - 48083334
Alignment:
Q  54 aatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgttagtcaatttg 148  Q
    |||||||||| ||||||||  || ||||||||||| |||| ||  | ||||||||||||  ||||||| | ||| |||||||||||| ||||||||    
T  48083239 aatggtcccttaactaattctcagttttcattttgatcccttaagttttaaaatcatcattttggtcccttaacctttgctccgttattcaatttg 48083334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 304
Target Start/End: Original strand, 14744275 - 14744313
Alignment:
Q  266 cacttttcatcatcttctctcttcttcttcctcatatct 304  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  14744275 cacttttcatcatcttccctgttcttcttcctcatatct 14744313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 53193093 - 53193143
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttgg 89  Q
    ||||||||||||| | |||||||||||||||||| ||| |||| |||||||    
T  53193093 aggctaaattaatccgatggtccctcaactaattaccagtttttattttgg 53193143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 304
Target Start/End: Complemental strand, 53809392 - 53809363
Alignment:
Q  275 tcatcttctctcttcttcttcctcatatct 304  Q
    ||||||||||||||||||||||||||||||    
T  53809392 tcatcttctctcttcttcttcctcatatct 53809363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 96
Target Start/End: Original strand, 3208510 - 3208538
Alignment:
Q  68 taatttccatttttcattttggtcccata 96  Q
    |||||||||||||||||||||||||||||    
T  3208510 taatttccatttttcattttggtcccata 3208538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 50809435 - 50809475
Alignment:
Q  56 tggtccctcaactaatttccatttttcattttggtcccata 96  Q
    |||||||| || ||||||| |||||||||||||||||||||    
T  50809435 tggtcccttaaataatttcaatttttcattttggtcccata 50809475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 50810936 - 50810896
Alignment:
Q  56 tggtccctcaactaatttccatttttcattttggtcccata 96  Q
    |||||||| || ||||||| |||||||||||||||||||||    
T  50810936 tggtcccttaaataatttcaatttttcattttggtcccata 50810896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 50864928 - 50864968
Alignment:
Q  56 tggtccctcaactaatttccatttttcattttggtcccata 96  Q
    |||||||| || ||||||| |||||||||||||||||||||    
T  50864928 tggtcccttaaataatttcaatttttcattttggtcccata 50864968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 50866427 - 50866387
Alignment:
Q  56 tggtccctcaactaatttccatttttcattttggtcccata 96  Q
    |||||||| || ||||||| |||||||||||||||||||||    
T  50866427 tggtcccttaaataatttcaatttttcattttggtcccata 50866387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 9081390 - 9081496
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatcaa-ttggtccttcaacttttgctccgt 137  Q
    ||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||  || |||||||||||| ||| ||| |||||||||||||| |    
T  9081390 aggctaaattaatccaatggtccctcaactaatttccggttttcattttggtcccataagtcataaaatcatcaatttgctccctcaacttttgctcctt 9081489  T
Q  138 tagtcaa 144  Q
    || ||||    
T  9081490 tattcaa 9081496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 43 - 143
Target Start/End: Complemental strand, 3332272 - 3332171
Alignment:
Q  43 taaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatcaa-ttggtccttcaacttttgctccgttagt 141  Q
    |||||||||  |||||||||||||||||||  || |||||||||||||||||||  |  |||||||||||| ||||||| ||||| ||||||||||||||    
T  3332272 taaattaatcaaatggtccctcaactaattaacagttttcattttggtcccataaattctaaaatcatcaatttggtccctcaacgtttgctccgttagt 3332173  T
Q  142 ca 143  Q
    ||    
T  3332172 ca 3332171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 3330689 - 3330799
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatcaatt-ggtccttcaacttttgctccgt 137  Q
    |||||||||||||  ||||||||||||||||||||||  |||||||||||||| | ||  ||||||||||| || || ||||| ||||| |||||||||     
T  3330689 aggctaaattaatcaaatggtccctcaactaatttcccattttcattttggtctcttaagtcttaaaatcaccatttcggtccctcaacatttgctccgc 3330788  T
Q  138 tagtcaatttg 148  Q
    || ||||||||    
T  3330789 tattcaatttg 3330799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 44376807 - 44376701
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgt 137  Q
    |||||||||||||  ||||||||||||||||||||| | ||||  |||||||||||||  | ||||||||||||  ||||||| | |||||||||||| |    
T  44376807 aggctaaattaatcaaatggtccctcaactaatttcgaatttttgttttggtcccataacttttaaaatcatcattttggtcccttaacttttgctccat 44376708  T
Q  138 tagtcaa 144  Q
    |||||||    
T  44376707 tagtcaa 44376701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 44385674 - 44385568
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgt 137  Q
    |||||||||||||  ||||||||||||||||||||| | ||||  |||||||||||||  | ||||||||||||  ||||||| | |||||||||||| |    
T  44385674 aggctaaattaatcaaatggtccctcaactaatttcgaatttttgttttggtcccataacttttaaaatcatcattttggtcccttaacttttgctccat 44385575  T
Q  138 tagtcaa 144  Q
    |||||||    
T  44385574 tagtcaa 44385568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 220 - 304
Target Start/End: Complemental strand, 17288192 - 17288107
Alignment:
Q  220 atgtccattgtatttaatagtgaaccgtcagcacataannnnnnnnc-acttttcatcatcttctctcttcttcttcctcatatct 304  Q
    |||||||||||||||||||||||||||||||||| |||        | |||||||||||||||||||||||| |||||||||||||    
T  17288192 atgtccattgtatttaatagtgaaccgtcagcacctaattttttttccacttttcatcatcttctctcttctccttcctcatatct 17288107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 44372727 - 44372832
Alignment:
Q  40 ggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgtt 138  Q
    |||||||||| |  ||||||||||||||||||||| | |||||||||||||| ||||  ||||||||| ||||  ||||||| || ||||||||||||||    
T  44372727 ggctaaattagtcaaatggtccctcaactaatttcgagttttcattttggtctcataactcttaaaattatcattttggtccctcgacttttgctccgtt 44372826  T
Q  139 agtcaa 144  Q
    | ||||    
T  44372827 attcaa 44372832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 44381583 - 44381688
Alignment:
Q  40 ggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgtt 138  Q
    |||||||||| |  ||||||||||||||||||||| | |||||||||||||| ||||  ||||||||| ||||  ||||||| || ||||||||||||||    
T  44381583 ggctaaattagtcaaatggtccctcaactaatttcgagttttcattttggtctcataactcttaaaattatcattttggtccctcgacttttgctccgtt 44381682  T
Q  139 agtcaa 144  Q
    | ||||    
T  44381683 attcaa 44381688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 148
Target Start/End: Complemental strand, 29589375 - 29589279
Alignment:
Q  53 caatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgttagtcaatttg 148  Q
    |||| ||||||||||||||| ||| ||||||||||||||| |||  ||||||||||||||  ||| ||| |||||||||||||||||| | ||||||    
T  29589375 caatagtccctcaactaattcccagttttcattttggtccaataagtcttaaaatcatcattttgctccctcaacttttgctccgttatttaatttg 29589279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 48312771 - 48312699
Alignment:
Q  40 ggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca 112  Q
    ||||||||||||  ||||||| |||||||||||  || |||||||||||||||||||  ||||||||||||||    
T  48312771 ggctaaattaatcaaatggtctctcaactaattcacagttttcattttggtcccataaatcttaaaatcatca 48312699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 16755869 - 16755974
Alignment:
Q  40 ggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgtt 138  Q
    ||||||||||||| |||||||||||||||||||  || ||||  |||||||||||||  | | ||||||||||  ||| ||| ||||| |||||||||||    
T  16755869 ggctaaattaatttaatggtccctcaactaattctcagtttttgttttggtcccataagtttaaaaatcatcattttgatccctcaacgtttgctccgtt 16755968  T
Q  139 agtcaa 144  Q
    | ||||    
T  16755969 attcaa 16755974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 48312021 - 48312094
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca 112  Q
    |||||| ||||||  |||||||||||||||||||| || || |||||||| |||||||  ||||||||||||||    
T  48312021 aggctacattaatctaatggtccctcaactaattttcagttctcattttgatcccataaatcttaaaatcatca 48312094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 304
Target Start/End: Original strand, 41515162 - 41515245
Alignment:
Q  220 atgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctcatatct 304  Q
    ||||||||| ||||||||||||||||||| |||| |||        |||||||||| |||||||||||||| |||||||||||||    
T  41515162 atgtccattatatttaatagtgaaccgtcggcacctaattttttt-cacttttcataatcttctctcttctccttcctcatatct 41515245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 41078770 - 41078808
Alignment:
Q  56 tggtccctcaactaatttccatttttcattttggtccca 94  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  41078770 tggtccctcaattaatttccatttttcattttggtccca 41078808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 32256500 - 32256457
Alignment:
Q  53 caatggtccctcaactaatttccatttttcattttggtcccata 96  Q
    |||||||||||||| ||||||| | |||||||||||||||||||    
T  32256500 caatggtccctcaaataatttcaagttttcattttggtcccata 32256457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 40811351 - 40811398
Alignment:
Q  53 caatggtccctcaactaatttccatttttcattttggtcccatatttc 100  Q
    |||||||||||||| ||||||| | ||||||||||||||||| |||||    
T  40811351 caatggtccctcaaataatttcaagttttcattttggtcccacatttc 40811398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 316
Target Start/End: Complemental strand, 44376633 - 44376587
Alignment:
Q  269 ttttcatcatcttctctcttcttcttcctcatatctatatcaacattt 316  Q
    ||||||||||||||||||||| || ||||||| |||||||||||||||    
T  44376633 ttttcatcatcttctctcttcctcctcctcat-tctatatcaacattt 44376587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 316
Target Start/End: Complemental strand, 44385500 - 44385454
Alignment:
Q  269 ttttcatcatcttctctcttcttcttcctcatatctatatcaacattt 316  Q
    ||||||||||||||||||||| || ||||||| |||||||||||||||    
T  44385500 ttttcatcatcttctctcttcctcctcctcat-tctatatcaacattt 44385454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 419 - 453
Target Start/End: Complemental strand, 7313852 - 7313818
Alignment:
Q  419 attctttcactcttcttctctcaacacaacacaaa 453  Q
    |||| ||||||||||||||||||||||||||||||    
T  7313852 attccttcactcttcttctctcaacacaacacaaa 7313818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 304
Target Start/End: Complemental strand, 35296722 - 35296684
Alignment:
Q  266 cacttttcatcatcttctctcttcttcttcctcatatct 304  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  35296722 cacttttcatcatcttccctattcttcttcctcatatct 35296684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 41079936 - 41079898
Alignment:
Q  56 tggtccctcaactaatttccatttttcattttggtccca 94  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  41079936 tggtccctcaattaatttccattttttattttggtccca 41079898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 35195 - 35154
Alignment:
Q  56 tggtccctcaactaatttccatttttcattttggtcccatat 97  Q
    |||||||| || ||||||||| ||||||||||||||||||||    
T  35195 tggtcccttaaataatttccaattttcattttggtcccatat 35154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 298
Target Start/End: Original strand, 3330905 - 3330934
Alignment:
Q  269 ttttcatcatcttctctcttcttcttcctc 298  Q
    ||||||||||||||||||||||||||||||    
T  3330905 ttttcatcatcttctctcttcttcttcctc 3330934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 16757478 - 16757421
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccata 96  Q
    |||||||||||||  |||||||||||||||||||  || ||||| ||||| |||||||    
T  16757478 aggctaaattaatcaaatggtccctcaactaattctcaattttcgttttgatcccata 16757421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 300
Target Start/End: Original strand, 45089669 - 45089702
Alignment:
Q  267 acttttcatcatcttctctcttcttcttcctcat 300  Q
    ||||||| ||||||||||||||||||||||||||    
T  45089669 acttttcttcatcttctctcttcttcttcctcat 45089702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 47456480 - 47456439
Alignment:
Q  53 caatggtccctcaactaatttccatttttcattttggtccca 94  Q
    |||||||||||||| ||||||| | |||||||||||||||||    
T  47456480 caatggtccctcaaataatttcaagttttcattttggtccca 47456439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 4871491 - 4871597
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatcaa-ttggtccttcaacttttgctccgt 137  Q
    |||||||||||||||||||| ||||||||||||| ||| |||||||||||||| ||||  ||||||||||||||| || |||||||||  ||||||||||    
T  4871491 aggctaaattaattcaatggcccctcaactaattcccaattttcattttggtctcataagtcttaaaatcatcaatttagtccttcaatgtttgctccgt 4871590  T
Q  138 tagtcaa 144  Q
    || ||||    
T  4871591 tattcaa 4871597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 23104126 - 23104020
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatcaattg-gtccttcaacttttgctccgt 137  Q
    |||||||||||||  |||||||||||||||||||  || |||||||||||||| ||||  |||||||||||||||| | |||| ||||||||||||||||    
T  23104126 aggctaaattaatcaaatggtccctcaactaattctcagttttcattttggtctcataagtcttaaaatcatcaatcgagtccctcaacttttgctccgt 23104027  T
Q  138 tagtcaa 144  Q
    || ||||    
T  23104026 tattcaa 23104020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 4872349 - 4872260
Alignment:
Q  40 ggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatcaa-ttggtccttcaactt 128  Q
    |||||||||||| ||||||||||||||||||||  || |||||||||||||||||||  ||||||||||||||| ||||||| |||||||    
T  4872349 ggctaaattaatccaatggtccctcaactaattctcagttttcattttggtcccataagtcttaaaatcatcaatttggtccctcaactt 4872260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 45535043 - 45535149
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatcaattg-gtccttcaacttttgctccgt 137  Q
    |||||||||||||  ||| |||||||||||||||  || |||||||||||||||||||  |||||||||||||||| | |||| ||||||||||||| ||    
T  45535043 aggctaaattaatcaaatagtccctcaactaattctcagttttcattttggtcccataagtcttaaaatcatcaatcgagtccctcaacttttgctctgt 45535142  T
Q  138 tagtcaa 144  Q
    || ||||    
T  45535143 tattcaa 45535149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 44498458 - 44498563
Alignment:
Q  40 ggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgtt 138  Q
    ||||||||||||  ||||||||||||| ||||||| | ||||| |||||||||||||  ||||||||||||||  ||||||| ||||||||||||| |||    
T  44498458 ggctaaattaatgaaatggtccctcaattaatttcgagttttcgttttggtcccataactcttaaaatcatcattttggtccctcaacttttgctctgtt 44498557  T
Q  139 agtcaa 144  Q
    | ||||    
T  44498558 attcaa 44498563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 44500100 - 44499992
Alignment:
Q  42 ctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgttag 140  Q
    ||||||||||  ||| ||||||||| ||||||| | ||||| |||||||||||||  ||||||||||||||  ||||||| | |||||||||||||||||    
T  44500100 ctaaattaatgaaattgtccctcaattaatttcgagttttcgttttggtcccataactcttaaaatcatcattttggtcccttaacttttgctccgttag 44500001  T
Q  141 tcaatttga 149  Q
    |||| ||||    
T  44500000 tcaaattga 44499992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 19750410 - 19750311
Alignment:
Q  41 gctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgtta 139  Q
    ||||||||||| |||||||||||||||||||| | | ||||||||||| |||||||  | ||||||||||||  || ||||||||||||||||| |||||    
T  19750410 gctaaattaatccaatggtccctcaactaattactagttttcattttgatcccataagttttaaaatcatcattttagtccttcaacttttgcttcgtta 19750311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 19789396 - 19789495
Alignment:
Q  41 gctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgtta 139  Q
    ||||||||||| |||||||||||||||||||| | | ||||||||||| |||||||  | ||||||||||||  || ||||||||||||||||| |||||    
T  19789396 gctaaattaatccaatggtccctcaactaattactagttttcattttgatcccataagttttaaaatcatcattttagtccttcaacttttgcttcgtta 19789495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 56085344 - 56085454
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgt 137  Q
    |||||||||||||  |||||||| |||||||||| ||| |||||||||||||| ||||  ||||||||||||||  ||||||| ||||  |||||| |||    
T  56085344 aggctaaattaatcaaatggtccatcaactaattaccagttttcattttggtctcataagtcttaaaatcatcattttggtccctcaatgtttgcttcgt 56085443  T
Q  138 tagtcaatttg 148  Q
    || ||||||||    
T  56085444 tattcaatttg 56085454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 220 - 304
Target Start/End: Complemental strand, 46795976 - 46795893
Alignment:
Q  220 atgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctcatatct 304  Q
    ||||||||||||||||||||||||||||| |||| |||        ||||||||||||||||||||||||| |||||||||||||    
T  46795976 atgtccattgtatttaatagtgaaccgtcggcacctaattttttt-cacttttcatcatcttctctcttctccttcctcatatct 46795893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 220 - 300
Target Start/End: Original strand, 47667344 - 47667423
Alignment:
Q  220 atgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctcat 300  Q
    ||||||||||||| |||||||||||||||||||| |||        |||||||||||||||||||||||||||||||||||    
T  47667344 atgtccattgtatctaatagtgaaccgtcagcacctaattttttt-cacttttcatcatcttctctcttcttcttcctcat 47667423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 222 - 300
Target Start/End: Original strand, 38554097 - 38554174
Alignment:
Q  222 gtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctcat 300  Q
    |||||||||||||||||||||||||||| ||| |||        |||||||||||||||||||||||||||||||||||    
T  38554097 gtccattgtatttaatagtgaaccgtcatcacttaattttttt-cacttttcatcatcttctctcttcttcttcctcat 38554174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 49895037 - 49895094
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccata 96  Q
    |||||||||||||  ||||||||||||||||||| ||| |||||||||||||||||||    
T  49895037 aggctaaattaatcaaatggtccctcaactaattaccagttttcattttggtcccata 49895094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 316
Target Start/End: Complemental strand, 44499885 - 44499839
Alignment:
Q  269 ttttcatcatcttctctcttcttcttcctcatatctatatcaacattt 316  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44499885 ttttcatcatcttctctcttcttcttcctca-atctatatcaacattt 44499839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 1519847 - 1519914
Alignment:
Q  78 ttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgttagtcaa 144  Q
    ||||||||||||||||||| ||| |||||||| || |||||||| ||||| ||||||| |||||||||    
T  1519847 ttttcattttggtcccataattcgtaaaatcaacatattggtccctcaacatttgctctgttagtcaa 1519914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 1521274 - 1521203
Alignment:
Q  78 ttttcattttggtcccatatttcttaaaatcatcaatt-ggtccttcaacttttgctccgttagtcaatttg 148  Q
    ||||||||||| ||||||| ||| |||||||| || || ||||| ||||||||| |||||||||||||||||    
T  1521274 ttttcattttgatcccataattcgtaaaatcaacattttggtccctcaacttttactccgttagtcaatttg 1521203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 316
Target Start/End: Complemental strand, 4872130 - 4872090
Alignment:
Q  275 tcatcttctctcttcttcttcctcatatctatatcaacattt 316  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  4872130 tcatcttctctcttcttcttcctca-atctatatcaacattt 4872090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 56086670 - 56086597
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca 112  Q
    |||||||||||||| |||||||  ||| |||||| ||| ||||||||||||||| |||  ||||||||| ||||    
T  56086670 aggctaaattaattaaatggtcattcagctaattaccaattttcattttggtcctataagtcttaaaattatca 56086597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 6349661 - 6349617
Alignment:
Q  50 attcaatggtccctcaactaatttccatttttcattttggtccca 94  Q
    ||||||||||||||||| ||||||| | |||||||||||||||||    
T  6349661 attcaatggtccctcaaataatttcaagttttcattttggtccca 6349617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 304
Target Start/End: Complemental strand, 307702 - 307668
Alignment:
Q  270 tttcatcatcttctctcttcttcttcctcatatct 304  Q
    ||||||||||||||||||||| |||||||||||||    
T  307702 tttcatcatcttctctcttctccttcctcatatct 307668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 300
Target Start/End: Complemental strand, 29665479 - 29665445
Alignment:
Q  266 cacttttcatcatcttctctcttcttcttcctcat 300  Q
    |||||||| ||||||||||||||||||||||||||    
T  29665479 cacttttcttcatcttctctcttcttcttcctcat 29665445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 419 - 453
Target Start/End: Original strand, 31183147 - 31183181
Alignment:
Q  419 attctttcactcttcttctctcaacacaacacaaa 453  Q
    |||| ||||||||||||||||||||||||||||||    
T  31183147 attccttcactcttcttctctcaacacaacacaaa 31183181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 42872407 - 42872361
Alignment:
Q  50 attcaatggtccctcaactaatttccatttttcattttggtcccata 96  Q
    |||||||||||||  || ||||| |||||||||||||||||||||||    
T  42872407 attcaatggtcccctaattaattaccatttttcattttggtcccata 42872361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 299
Target Start/End: Original strand, 52137643 - 52137673
Alignment:
Q  269 ttttcatcatcttctctcttcttcttcctca 299  Q
    |||||||||||||||||||||||||||||||    
T  52137643 ttttcatcatcttctctcttcttcttcctca 52137673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 27851037 - 27850996
Alignment:
Q  53 caatggtccctcaactaatttccatttttcattttggtccca 94  Q
    |||||||||||||| ||||||| | |||||||||||||||||    
T  27851037 caatggtccctcaaataatttcaagttttcattttggtccca 27850996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 6348167 - 6348207
Alignment:
Q  54 aatggtccctcaactaatttccatttttcattttggtccca 94  Q
    ||||||||||||| ||||||| | |||||||||||||||||    
T  6348167 aatggtccctcaaataatttcaagttttcattttggtccca 6348207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 23233815 - 23233709
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgt 137  Q
    |||||||||||||  ||||||||||||||||||| | | |||||||||||||||||||  ||||||||||||||  ||||||| ||||||||||||||||    
T  23233815 aggctaaattaatcaaatggtccctcaactaattacaaattttcattttggtcccataagtcttaaaatcatcattttggtccctcaacttttgctccgt 23233716  T
Q  138 tagtcaa 144  Q
    || ||||    
T  23233715 tattcaa 23233709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 23231538 - 23231610
Alignment:
Q  40 ggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca 112  Q
    ||||||||||||  ||||||||||||||||||| | | |||| ||||||||||||||  ||||||||||||||    
T  23231538 ggctaaattaatcaaatggtccctcaactaattacgagtttttattttggtcccataagtcttaaaatcatca 23231610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 19397746 - 19397795
Alignment:
Q  268 cttttcatcatcttctctcttcttcttcctcatatctatatcaacatttc 317  Q
    |||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  19397746 cttttcatcatcttctctcttcttcttcctcatatcttcatcaacctttc 19397795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 28562917 - 28562871
Alignment:
Q  50 attcaatggtccctcaactaatttccatttttcattttggtcccata 96  Q
    ||||||||||||||||| ||||||| | |||||||||||||||||||    
T  28562917 attcaatggtccctcaaataatttcaaattttcattttggtcccata 28562871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 2277571 - 2277531
Alignment:
Q  56 tggtccctcaactaatttccatttttcattttggtcccata 96  Q
    ||||||||||| ||||||||| |||||||||||||||||||    
T  2277571 tggtccctcaaataatttccagttttcattttggtcccata 2277531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 11317476 - 11317432
Alignment:
Q  50 attcaatggtccctcaactaatttccatttttcattttggtccca 94  Q
    ||||||||||||||||| ||||||| | |||||||||||||||||    
T  11317476 attcaatggtccctcaaataatttcaaattttcattttggtccca 11317432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 299
Target Start/End: Original strand, 4920044 - 4920074
Alignment:
Q  269 ttttcatcatcttctctcttcttcttcctca 299  Q
    |||||||||||||||||||||||||||||||    
T  4920044 ttttcatcatcttctctcttcttcttcctca 4920074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 419 - 453
Target Start/End: Original strand, 34387324 - 34387358
Alignment:
Q  419 attctttcactcttcttctctcaacacaacacaaa 453  Q
    |||| ||||||||||||||||||||||||||||||    
T  34387324 attccttcactcttcttctctcaacacaacacaaa 34387358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 42641968 - 42641922
Alignment:
Q  50 attcaatggtccctcaactaatttccatttttcattttggtcccata 96  Q
    ||||||||||||||||| ||||||| | |||| ||||||||||||||    
T  42641968 attcaatggtccctcaaataatttcaaatttttattttggtcccata 42641922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 299
Target Start/End: Original strand, 45699746 - 45699776
Alignment:
Q  269 ttttcatcatcttctctcttcttcttcctca 299  Q
    |||||||||||||||||||||||||||||||    
T  45699746 ttttcatcatcttctctcttcttcttcctca 45699776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 32469156 - 32469200
Alignment:
Q  50 attcaatggtccctcaactaatttccatttttcattttggtccca 94  Q
    ||||||||||||||||| ||||||| | ||||||||||| |||||    
T  32469156 attcaatggtccctcaaataatttcaagttttcattttgatccca 32469200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 34147150 - 34147190
Alignment:
Q  56 tggtccctcaactaatttccatttttcattttggtcccata 96  Q
    ||||||||||| |||||| || |||||||||||||||||||    
T  34147150 tggtccctcaaataattttcagttttcattttggtcccata 34147190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 9226331 - 9226224
Alignment:
Q  42 ctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatcaa-ttggtccttcaacttttgctccgttag 140  Q
    |||||||||||||||||||||||||||||||  || |||||||||||||||||||  | ||||||||||||| |||| || | ||||||| ||||||||     
T  9226331 ctaaattaattcaatggtccctcaactaattctcagttttcattttggtcccataaattttaaaatcatcaatttggccccttaacttttactccgttat 9226232  T
Q  141 tcaatttg 148  Q
    ||||||||    
T  9226231 tcaatttg 9226224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 27556267 - 27556373
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatcaattg-gtccttcaacttttgctccgt 137  Q
    |||||||||||||| |||||||||| ||||||||  || |||| ||||||||||||||  |||||||||||||||| | |||| ||||||||||||||||    
T  27556267 aggctaaattaattaaatggtcccttaactaattctcagtttttattttggtcccataagtcttaaaatcatcaatcgagtccctcaacttttgctccgt 27556366  T
Q  138 tagtcaa 144  Q
    || ||||    
T  27556367 tattcaa 27556373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 40 - 148
Target Start/End: Complemental strand, 6049542 - 6049433
Alignment:
Q  40 ggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgtt 138  Q
    ||||||||||||  ||||||||||||||||||| ||| |||| ||||||||| ||||  || |||||||||||  ||||||| ||||| |||||| ||||    
T  6049542 ggctaaattaatcaaatggtccctcaactaattaccagtttttattttggtctcataagtcctaaaatcatcattttggtccctcaacgtttgctacgtt 6049443  T
Q  139 agtcaatttg 148  Q
    | ||||||||    
T  6049442 attcaatttg 6049433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 317
Target Start/End: Complemental strand, 40533551 - 40533454
Alignment:
Q  220 atgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctcatatctatatcaacatttc 317  Q
    |||||||||||| |||||||||||||||| |||| |||        | |||||||||||||||||||||||||||||| ||||||  |||||| ||||    
T  40533551 atgtccattgtaattaatagtgaaccgtcggcacctaatttattttcgcttttcatcatcttctctcttcttcttcctgatatcttcatcaacctttc 40533454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 144
Target Start/End: Complemental strand, 5613165 - 5613098
Alignment:
Q  78 ttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgttagtcaa 144  Q
    ||||||||||||||||||| ||| |||||||| || |||||||| ||||| |||||||||||||||||    
T  5613165 ttttcattttggtcccataattcgtaaaatcaacatattggtccctcaacgtttgctccgttagtcaa 5613098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 26286448 - 26286515
Alignment:
Q  78 ttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgttagtcaa 144  Q
    ||||||||||||||||||| ||| |||||||| || |||||||| ||||| |||||||||||||||||    
T  26286448 ttttcattttggtcccataattcgtaaaatcaacatattggtccctcaacgtttgctccgttagtcaa 26286515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 26287864 - 26287793
Alignment:
Q  78 ttttcattttggtcccatatttcttaaaatcatcaatt-ggtccttcaacttttgctccgttagtcaatttg 148  Q
    ||||||||||||||||||| ||| |||||||| || || ||||| ||||||||| |||||||||||||||||    
T  26287864 ttttcattttggtcccataattcgtaaaatcaacattttggtccctcaacttttactccgttagtcaatttg 26287793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 3617616 - 3617510
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgt 137  Q
    ||||||||||||| ||| ||| ||||||||||||  || ||||| |||||||||||||  | | ||||||||||  ||||||| ||||| ||||||||||    
T  3617616 aggctaaattaatccaacggttcctcaactaattctcagttttcgttttggtcccataagtttaaaaatcatcattttggtccctcaacgtttgctccgt 3617517  T
Q  138 tagtcaa 144  Q
    || ||||    
T  3617516 tattcaa 3617510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 6047916 - 6048025
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgt 137  Q
    |||||||||||||  |||| |||||||||||||| ||| |||| ||||||||||||||  || || ||| ||||  ||||||| ||||||||||||||||    
T  6047916 aggctaaattaatcaaatgatccctcaactaattaccagttttaattttggtcccataagtcctataattatcattttggtcc-tcaacttttgctccgt 6048014  T
Q  138 tagtcaatttg 148  Q
     | ||||||||    
T  6048015 cattcaatttg 6048025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 3615239 - 3615354
Alignment:
Q  34 tattgaggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgc 132  Q
    |||| |||||||||||||  |||||||||||||||||||  ||  |||| |||||||||||||  | | ||||||||||  ||||||| ||||| |||||    
T  3615239 tatttaggctaaattaatcaaatggtccctcaactaattctcagatttcgttttggtcccataagtataaaaatcatcattttggtccctcaacgtttgc 3615338  T
Q  133 tccgttagtcaatttg 148  Q
    ||| ||| || |||||    
T  3615339 tccattattcgatttg 3615354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 48528843 - 48528773
Alignment:
Q  220 atgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttctt 291  Q
    |||||||||||||||||||||||||||||| ||| |||        ||||||||||||||||||||||||||    
T  48528843 atgtccattgtatttaatagtgaaccgtcaacacctaa-ttattttcacttttcatcatcttctctcttctt 48528773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 27557591 - 27557543
Alignment:
Q  269 ttttcatcatcttctctcttcttcttcctcat--atctatatcaacatt 315  Q
    |||||||||||||||||||||||||||||| |  |||||||||||||||    
T  27557591 ttttcatcatcttctctcttcttcttcctcctcaatctatatcaacatt 27557543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 52076531 - 52076638
Alignment:
Q  42 ctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgttag 140  Q
    ||||||||||  |||| ||||||||||||||  || ||||| ||||||||||||   ||  ||||||||||  ||||||| ||||| ||||||||||||     
T  52076531 ctaaattaatcaaatgatccctcaactaattctcagttttcgttttggtcccattagtccaaaaatcatcattttggtccctcaacgtttgctccgttat 52076630  T
Q  141 tcaatttg 148  Q
    || |||||    
T  52076631 tcgatttg 52076638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 453
Target Start/End: Original strand, 52143589 - 52143628
Alignment:
Q  414 ctagaattctttcactcttcttctctcaacacaacacaaa 453  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  52143589 ctagcattccttcactcttcttctctcaacacaacacaaa 52143628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 299
Target Start/End: Complemental strand, 51446742 - 51446712
Alignment:
Q  269 ttttcatcatcttctctcttcttcttcctca 299  Q
    |||||||||||||||||||||||||||||||    
T  51446742 ttttcatcatcttctctcttcttcttcctca 51446712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 20064190 - 20064231
Alignment:
Q  56 tggtccctcaactaatttccatttttcattttggtcccatat 97  Q
    ||||||||||| ||||||||  ||||||||||||||||||||    
T  20064190 tggtccctcaattaatttcccgttttcattttggtcccatat 20064231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 52078213 - 52078156
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccata 96  Q
    |||||||||||||  ||| |||||||||||||||  || ||||| |||||||||||||    
T  52078213 aggctaaattaatctaatagtccctcaactaattctcaattttctttttggtcccata 52078156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 52627526 - 52627567
Alignment:
Q  53 caatggtccctcaactaatttccatttttcattttggtccca 94  Q
    |||||||||||||| ||||||| | |||||||||||||||||    
T  52627526 caatggtccctcaaataatttcaagttttcattttggtccca 52627567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 41874073 - 41874033
Alignment:
Q  56 tggtccctcaactaatttccatttttcattttggtcccata 96  Q
    ||||||||||| ||||||||||||||||| |||||| ||||    
T  41874073 tggtccctcaattaatttccatttttcatcttggtctcata 41874033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 50444806 - 50444762
Alignment:
Q  50 attcaatggtccctcaactaatttccatttttcattttggtccca 94  Q
    ||||||||||||||||| ||||||| | |||||||||| ||||||    
T  50444806 attcaatggtccctcaaataatttcaaattttcattttagtccca 50444762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 10667966 - 10668076
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgt 137  Q
    |||||||||||||  ||||||||||||||||||||| | |||||||||||||||||||  | ||||||||| ||  ||||||| ||||| ||||||| ||    
T  10667966 aggctaaattaatcaaatggtccctcaactaatttcgagttttcattttggtcccataaattttaaaatcagcattttggtccctcaacatttgctctgt 10668065  T
Q  138 tagtcaatttg 148  Q
    |||||||||||    
T  10668066 tagtcaatttg 10668076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 220 - 304
Target Start/End: Original strand, 38150 - 38234
Alignment:
Q  220 atgtccattgtatttaatagtgaaccgtcagcacataannnnnnnncacttttcatcatcttctctcttcttcttcctcatatct 304  Q
    ||||||||||||||||| |||||||||||||||| |||        ||||||||||||||||||||||||| |||||||||||||    
T  38150 atgtccattgtatttaacagtgaaccgtcagcacctaatttttttccacttttcatcatcttctctcttctccttcctcatatct 38234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 128
Target Start/End: Original strand, 7844712 - 7844798
Alignment:
Q  43 taaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaactt 128  Q
    ||||||||| ||||||||||| |||||||| ||| |||||||||||||||||||  ||||||||||||||  ||||||| |||||||    
T  7844712 taaattaatccaatggtcccttaactaattaccagttttcattttggtcccataagtcttaaaatcatcattttggtccctcaactt 7844798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 24192778 - 24192676
Alignment:
Q  43 taaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgttagt 141  Q
    |||||||||| ||||||||||||| ||||||| | ||||| |||||||||||||  ||||||||||||||  ||||||  ||||||||| |||||||| |    
T  24192778 taaattaattaaatggtccctcaattaatttcgagttttcgttttggtcccataactcttaaaatcatcattttggtctctcaacttttactccgttaat 24192679  T
Q  142 caa 144  Q
    |||    
T  24192678 caa 24192676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 39174845 - 39174740
Alignment:
Q  40 ggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgtt 138  Q
    ||||||||||||  |||||||||||||||||||   | ||||||||||||||| |||  | ||||||||||||  ||||||| |||||||||||||||||    
T  39174845 ggctaaattaatcaaatggtccctcaactaattataagttttcattttggtcctataagttttaaaatcatcattttggtccctcaacttttgctccgtt 39174746  T
Q  139 agtcaa 144  Q
    | ||||    
T  39174745 attcaa 39174740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 138
Target Start/End: Original strand, 32552293 - 32552393
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgt 137  Q
    |||||||||||||  ||||||||||||||||||| | | ||||||||||| ||| |||  |||||||||| |||  ||||||| ||||||||||||||||    
T  32552293 aggctaaattaatctaatggtccctcaactaattacgagttttcattttgatcctataagtcttaaaatcgtcattttggtccctcaacttttgctccgt 32552392  T
Q  138 t 138  Q
    |    
T  32552393 t 32552393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 138
Target Start/End: Original strand, 39173113 - 39173213
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgt 137  Q
    |||||||||||||  ||||||||||||| ||||| | | ||||||||||||||| |||  |||||||||| |||  ||||||| ||||||||||||||||    
T  39173113 aggctaaattaatcaaatggtccctcaattaattacgagttttcattttggtcctataagtcttaaaatcgtcattttggtccctcaacttttgctccgt 39173212  T
Q  138 t 138  Q
    |    
T  39173213 t 39173213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 10669561 - 10669458
Alignment:
Q  42 ctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgttag 140  Q
    |||||||||| |||| ||||||||||||||||  | |||||||||||||||||||  ||||||||||| ||  ||||| | ||||| ||||||||||||     
T  10669561 ctaaattaatccaatagtccctcaactaattttgagttttcattttggtcccataaatcttaaaatcaacattttggtacctcaacgtttgctccgttat 10669462  T
Q  141 tcaa 144  Q
    ||||    
T  10669461 tcaa 10669458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 40 - 138
Target Start/End: Complemental strand, 32554025 - 32553926
Alignment:
Q  40 ggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgtt 138  Q
    ||||||||||||  ||||||||||||||||||| | | ||||||||||| ||| |||  |||||||||| |||  ||||||| |||||||||||||||||    
T  32554025 ggctaaattaatcaaatggtccctcaactaattacgagttttcattttgatcctataagtcttaaaatcgtcattttggtccctcaacttttgctccgtt 32553926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 35801094 - 35800998
Alignment:
Q  43 taaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgtt 138  Q
    |||||||||  ||||||||||||||||||| | | ||||||||||||||| |||  |||||||||| |||  || |||| |||||||||||||||||    
T  35801094 taaattaatcaaatggtccctcaactaattacgagttttcattttggtcctataagtcttaaaatcgtcattttagtccctcaacttttgctccgtt 35800998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 149
Target Start/End: Original strand, 24191378 - 24191485
Alignment:
Q  43 taaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgttagt 141  Q
    |||||||||  |||| |||||||||||||||| | ||||| |||||||||||||  ||||||||||||||  ||||||  | ||||||||||| |||| |    
T  24191378 taaattaatcaaatgatccctcaactaatttcgagttttcgttttggtcccataactcttaaaatcatcattttggtctcttaacttttgctctgttact 24191477  T
Q  142 caatttga 149  Q
    ||| ||||    
T  24191478 caaattga 24191485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 316
Target Start/End: Original strand, 24191593 - 24191639
Alignment:
Q  269 ttttcatcatcttctctcttcttcttcctcatatctatatcaacattt 316  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24191593 ttttcatcatcttctctcttcttcttcctca-atctatatcaacattt 24191639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 35799449 - 35799554
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatcaatt-ggtccttcaacttttgctccgt 137  Q
    |||||||||||||  |||||||| |||||||||| | | ||||||||||||||  |||  ||||||||| |||| || ||||| ||||||||||||||||    
T  35799449 aggctaaattaatcaaatggtcc-tcaactaattacaagttttcattttggtcttataagtcttaaaattatcattttggtccctcaacttttgctccgt 35799547  T
Q  138 tagtcaa 144  Q
    || ||||    
T  35799548 tattcaa 35799554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 42793915 - 42793964
Alignment:
Q  268 cttttcatcatcttctctcttcttcttcctcatatctatatcaacatttc 317  Q
    |||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  42793915 cttttcatcatcttctctcttcttcttcctcatatcttcatcaacctttc 42793964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 10668168 - 10668216
Alignment:
Q  266 cacttttcatcatcttctctcttcttcttcctcatatctatatcaacattt 316  Q
    |||||||| |||||||||||||||||||||||||||  |||||||||||||    
T  10668168 cacttttcttcatcttctctcttcttcttcctcata--tatatcaacattt 10668216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 414 - 453
Target Start/End: Complemental strand, 24305996 - 24305957
Alignment:
Q  414 ctagaattctttcactcttcttctctcaacacaacacaaa 453  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  24305996 ctagaattccttcactcttcttctctcaacacaacacaaa 24305957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 304
Target Start/End: Complemental strand, 45395921 - 45395883
Alignment:
Q  266 cacttttcatcatcttctctcttcttcttcctcatatct 304  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  45395921 cacttttcatcatcttccctcttcttcttcctcatatct 45395883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 38697108 - 38697068
Alignment:
Q  56 tggtccctcaactaatttccatttttcattttggtcccata 96  Q
    ||||||||||| ||||||||| |||||||||||||||||||    
T  38697108 tggtccctcaattaatttccagttttcattttggtcccata 38697068  T

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Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 419 - 453
Target Start/End: Complemental strand, 39581612 - 39581578
Alignment:
Q  419 attctttcactcttcttctctcaacacaacacaaa 453  Q
    |||| ||||||||||||||||||||||||||||||    
T  39581612 attccttcactcttcttctctcaacacaacacaaa 39581578  T

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Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 253
Target Start/End: Original strand, 24068484 - 24068517
Alignment:
Q  220 atgtccattgtatttaatagtgaaccgtcagcac 253  Q
    ||||||||||||| ||||||||||||||||||||    
T  24068484 atgtccattgtatctaatagtgaaccgtcagcac 24068517  T

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Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 32798637 - 32798596
Alignment:
Q  53 caatggtccctcaactaatttccatttttcattttggtccca 94  Q
    |||||||||||||| ||||||| | |||||||||||||||||    
T  32798637 caatggtccctcaaataatttcaagttttcattttggtccca 32798596  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 304
Target Start/End: Complemental strand, 36757131 - 36757102
Alignment:
Q  275 tcatcttctctcttcttcttcctcatatct 304  Q
    ||||||||||||||||||||||||||||||    
T  36757131 tcatcttctctcttcttcttcctcatatct 36757102  T

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Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 17702377 - 17702337
Alignment:
Q  56 tggtccctcaactaatttccatttttcattttggtcccata 96  Q
    |||||||| || ||||||||| |||||||||||||||||||    
T  17702377 tggtcccttaattaatttccaattttcattttggtcccata 17702337  T

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Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 28418820 - 28418860
Alignment:
Q  56 tggtccctcaactaatttccatttttcattttggtcccata 96  Q
    |||||||| || ||||||| |||||||||||||||||||||    
T  28418820 tggtcccttaaataatttcaatttttcattttggtcccata 28418860  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 28420276 - 28420236
Alignment:
Q  56 tggtccctcaactaatttccatttttcattttggtcccata 96  Q
    |||||||| || ||||||| |||||||||||||||||||||    
T  28420276 tggtcccttaaataatttcaatttttcattttggtcccata 28420236  T

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Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 35070775 - 35070703
Alignment:
Q  40 ggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca 112  Q
    ||||||||||||  |||||||| |||  ||||| ||| ||||||||||||||  |||  ||||||||||||||    
T  35070775 ggctaaattaatcaaatggtccttcagttaattaccagttttcattttggtcatataagtcttaaaatcatca 35070703  T

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Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 39516447 - 39516415
Alignment:
Q  220 atgtccattgtatttaatagtgaaccgtcagca 252  Q
    ||||||||||||| |||||||||||||||||||    
T  39516447 atgtccattgtatctaatagtgaaccgtcagca 39516415  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 9220576 - 9220473
Alignment:
Q  42 ctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatca-attggtccttcaacttttgctccgttag 140  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||  |||| ||||||  |  ||||||| ||||||||||||| ||||     
T  9220576 ctaaattaattcaatggtccctcaactaatttccagttttcattttgttcccataagtcttgaaatcagaattttggtccctcaacttttgctctgttat 9220477  T
Q  141 tcaa 144  Q
    ||||    
T  9220476 tcaa 9220473  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 300
Target Start/End: Complemental strand, 224492 - 224458
Alignment:
Q  266 cacttttcatcatcttctctcttcttcttcctcat 300  Q
    |||||||||||||||||||||||||||||||||||    
T  224492 cacttttcatcatcttctctcttcttcttcctcat 224458  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 304
Target Start/End: Original strand, 5975966 - 5976004
Alignment:
Q  266 cacttttcatcatcttctctcttcttcttcctcatatct 304  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  5975966 cacttttcatcatcttctctcttctccttcctcatatct 5976004  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 32757839 - 32757879
Alignment:
Q  56 tggtccctcaactaatttccatttttcattttggtcccata 96  Q
    ||||||||||| ||||||||| |||||||||||||||||||    
T  32757839 tggtccctcaaataatttccagttttcattttggtcccata 32757879  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 253
Target Start/End: Original strand, 4124929 - 4124959
Alignment:
Q  223 tccattgtatttaatagtgaaccgtcagcac 253  Q
    |||||||||||||||||||||||||||||||    
T  4124929 tccattgtatttaatagtgaaccgtcagcac 4124959  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 34894163 - 34894200
Alignment:
Q  56 tggtccctcaactaatttccatttttcattttggtccc 93  Q
    |||||||| || ||||||||||||||||||||||||||    
T  34894163 tggtcccttaattaatttccatttttcattttggtccc 34894200  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 325289 - 325249
Alignment:
Q  54 aatggtccctcaactaatttccatttttcattttggtccca 94  Q
    ||||||||||||| ||||||| | |||||||||||||||||    
T  325289 aatggtccctcaaataatttcaagttttcattttggtccca 325249  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 13519688 - 13519724
Alignment:
Q  272 tcatcatcttctctcttcttcttcctcatatctatat 308  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  13519688 tcatcctcttctcttttcttcttcctcatatctatat 13519724  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 34899053 - 34899013
Alignment:
Q  56 tggtccctcaactaatttccatttttcattttggtcccata 96  Q
    |||||||| || |||||| ||||||||||||||||||||||    
T  34899053 tggtcccttaattaattttcatttttcattttggtcccata 34899013  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 36898163 - 36898209
Alignment:
Q  266 cacttttcatcatcttctctcttcttcttcctcatatctatatcaacattt 316  Q
    |||||||||||||||||||   |||||||||||| ||||||||||||||||    
T  36898163 cacttttcatcatcttctc---tcttcttcctca-atctatatcaacattt 36898209  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 456
Target Start/End: Original strand, 36898322 - 36898354
Alignment:
Q  424 ttcactcttcttctctcaacacaacacaaatcc 456  Q
    |||||||||||||||||||||||||| ||||||    
T  36898322 ttcactcttcttctctcaacacaacataaatcc 36898354  T

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Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 18240397 - 18240502
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttctt-aaaatcatcaa-ttggtccttcaacttttgctccg 136  Q
    ||||||||||||| ||| ||||| ||||||||||| || ||||||||||| |||||||| |||| ||||||||||| ||||||| ||||||||||||| |    
T  18240397 aggctaaattaatccaacggtcc-tcaactaattttcagttttcattttgatcccatatgtcttaaaaatcatcaatttggtccctcaacttttgctctg 18240495  T
Q  137 ttagtca 143  Q
    |||||||    
T  18240496 ttagtca 18240502  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 18242428 - 18242320
Alignment:
Q  39 aggctaaattaattcaatggtccctcaactaatttccatttttcattttggtcccatatttcttaaaatcatcaa-ttggtccttcaacttttgctccgt 137  Q
    ||||||||||||  |||||||||||||||||||||  | |||| ||| ||||||||||  ||||||||||||||| ||||||| |||||||||||||| |    
T  18242428 aggctaaattaac-caatggtccctcaactaatttttaatttttattctggtcccataagtcttaaaatcatcaatttggtccctcaacttttgctccat 18242330  T
Q  138 tagtcaattt 147  Q
    || |||||||    
T  18242329 tattcaattt 18242320  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 15730138 - 15730094
Alignment:
Q  50 attcaatggtccctcaactaatttccatttttcattttggtccca 94  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||    
T  15730138 attcattggtccctcaattaatttccatttttcattttggtccca 15730094  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 232190 - 232230
Alignment:
Q  56 tggtccctcaactaatttccatttttcattttggtcccata 96  Q
    |||||||| || ||||||| |||||||||||||||||||||    
T  232190 tggtcccttaaataatttcaatttttcattttggtcccata 232230  T

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Target: scaffold1251 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 1187 - 1147
Alignment:
Q  56 tggtccctcaactaatttccatttttcattttggtcccata 96  Q
    ||||||||||| ||||||||| |||||||||||||||||||    
T  1187 tggtccctcaaataatttccagttttcattttggtcccata 1147  T

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Target: scaffold0031 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 125338 - 125297
Alignment:
Q  53 caatggtccctcaactaatttccatttttcattttggtccca 94  Q
    |||||||||||||| ||||||| | |||||||||||||||||    
T  125338 caatggtccctcaaataatttcaaattttcattttggtccca 125297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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