View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21187_low_9 (Length: 393)
Name: NF21187_low_9
Description: NF21187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21187_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 374
Target Start/End: Complemental strand, 56230115 - 56229754
Alignment:
| Q |
11 |
aaaatgaaacttatattaaacaacaaaagatgcgcctcttagcacaaagtatgtgtcaaagaagatcaacaaggtttaaatacaaaactccatcaccaat |
110 |
Q |
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| T |
56230115 |
aaaatgaaacttatattaaacaacaaaagatgcgcctcttaacacaaagtatgtgtcaaggaagatcaacaaagtttaaatacaaaactccatcaccaat |
56230016 |
T |
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| Q |
111 |
aacaagaaacaaagtaataacacttgaaaattataagttaataaacacgtaatttgaacaatattaagtatctattttatttta-gaaatttgacctagt |
209 |
Q |
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| T |
56230015 |
aacaagaaacaaagtaataacacttgaaaattataagttaataaacacgtaatttgaacaatattaattatctattttattttatgaaatttgacgtagt |
56229916 |
T |
|
| Q |
210 |
atatgtgtgcaaaataacaaagtcataataatatagttaaaagttaacaatggtagatacaagaagaagaaagnnnnnnnnnntgataaaattttaccag |
309 |
Q |
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| T |
56229915 |
atatgtgtgcaaaataacaaagtcataataatatagttaaaagttaacaatggtagatacaagaagaagaa---gaaaaaaaatgataaaattttaccag |
56229819 |
T |
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| Q |
310 |
tgtcaaggttcccaataataacatcttcaccgtatctagcttttgtaaggagggaatgagaagga |
374 |
Q |
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| T |
56229818 |
tgtcaaggttcccaataataacatcttcaccgtatctagcttttgtaaggagggaatgagaagga |
56229754 |
T |
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Back To:
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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 303 - 374
Target Start/End: Complemental strand, 39187207 - 39187136
Alignment:
| Q |
303 |
ttaccagtgtcaaggttcccaataataacatcttcaccgtatctagcttttgtaaggagggaatgagaagga |
374 |
Q |
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| T |
39187207 |
ttaccagaatcaagattcccaataataacatcttcaccgtatcttgcttttctaaagagggaatgagaagga |
39187136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 43277076 - 43277035
Alignment:
| Q |
11 |
aaaatgaaacttatattaaacaacaaaagatgcgcctcttag |
52 |
Q |
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| T |
43277076 |
aaaatgaaacttatattaaacgacaaaagatgctcctcttag |
43277035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 7125648 - 7125694
Alignment:
| Q |
11 |
aaaatgaaacttatattaaacaacaaaagatgcgcctcttagcacaa |
57 |
Q |
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| T |
7125648 |
aaaatgaaacttatattaaacgataaaagatgctcctctcagcacaa |
7125694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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