View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21188_high_6 (Length: 237)
Name: NF21188_high_6
Description: NF21188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21188_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 15908468 - 15908246
Alignment:
| Q |
1 |
ctgaaaatattatcttgcaagattttgttgctgcctttttgtatgcatagattcaagcca-atatagaaactgtactaacattttagccttttnnnnnnn |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
15908468 |
ctgaaaatattatcttgcaagattttgttgctgcctttttgtatgcatagattcaagccatatatagcaactgtactaacattttagccttttcaaaaaa |
15908369 |
T |
|
| Q |
100 |
taaaatagaaacagtactaatttcttgtttgagtaaatttgtcaaaacagaggaaactttactaaaccaaaaatagaagaagaagtagtcagagagaatt |
199 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
15908368 |
taaaatagaaacagtactagtttcttgtttgagtaaatttgtcaaaacagaggaaactttactaaaccaaaaatagaagaagaactagtcagagagaatt |
15908269 |
T |
|
| Q |
200 |
ttcttagaaaaaagttcaaaagtg |
223 |
Q |
| |
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|||||| ||||||||||||||||| |
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|
| T |
15908268 |
ttctta-aaaaaagttcaaaagtg |
15908246 |
T |
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