View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21188_low_1 (Length: 897)
Name: NF21188_low_1
Description: NF21188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21188_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 680; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 680; E-Value: 0
Query Start/End: Original strand, 19 - 763
Target Start/End: Complemental strand, 42096089 - 42095341
Alignment:
| Q |
19 |
ctgatgaaccttgttctttacatggctagcactgctgaatcaacaatcacaaaaggatccaaccaaaattcaataaactttatcaaatcctcatgtagag |
118 |
Q |
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| T |
42096089 |
ctgatgaaccttgttctttacatggctagcactgctgaatcaacaatcacaaaaggatccaaccaaaattcaataaactttatcaaatcctcgtgtagag |
42095990 |
T |
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| Q |
119 |
ccactcgttaccctgatgtatgtgttcaaactctcttgggctatgcaaacgtgattaacgaaaacgagcaaaaactagccatcgttgccttgacagtaag |
218 |
Q |
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| T |
42095989 |
ccactcgttaccctgatgtatgtgttcaaactctcttgggctatgcaaacatgattaacgaaaacgagcaaaaactagccatcgttgccttgacagtaag |
42095890 |
T |
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| Q |
219 |
catatcaaggactcaatcaagtgcatcattcatgaagaaattttccaaggtaaaagggattaagccaagggaatatagtgctgtgcaagattgcaaagca |
318 |
Q |
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| T |
42095889 |
catatcaaggactcaatcaagtgcatcattcatgaagaaattttccaaggtaaaagggattaagccaagggaatatagtgctgtgcaagattgcaaagca |
42095790 |
T |
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| Q |
319 |
aacatggatagtagcgtggaccgtcttaacaaatcggttaaggagctaggacttttgggtaaggctaagagagaggatttggtttggcatataagtaatg |
418 |
Q |
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| T |
42095789 |
aacatggatagtagcgtggaccgtcttaacaaatcggttaaggagctaggacttttgggtaaggctaagggagaggatttggtttggcatataaataatg |
42095690 |
T |
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| Q |
419 |
ttcaaacttgggttagtgctgctcttactgatcagaacacttgtgttgacaacttttctagtcctcatatggatcaaaatttgaaggctgcaattggtgc |
518 |
Q |
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| T |
42095689 |
ttcaaacttgggttagtgctgctcttactgatcagaacacttgtgttgacaacttttctagtcctcatatggatcaaaatttgaaggctgcaattggtgc |
42095590 |
T |
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| Q |
519 |
taaggttgttggtgtttctcaagttactagtaatgcacttgccttggttaataactttgcctccaagcatcgttaactatgtac----atacttgtgaaa |
614 |
Q |
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| T |
42095589 |
taaggttgttggtgtttctcaagttactagtaatgcacttgccttggttaataactttgcctccaagcatcgttaactatttacatatatacttgtgaaa |
42095490 |
T |
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| Q |
615 |
agtgacataagccgtatgatagtttgttgtttaatttgttcaattttatgttcatggtttgtatccccttttgtgttctcccaataatactatatttagt |
714 |
Q |
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| T |
42095489 |
agtgacataagccgtatgatagtttgttgtttaatttgttcaattttatgttcatggtttgtatccccttttgtgttctcccaataatactatatttagt |
42095390 |
T |
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| Q |
715 |
tctaggaagtgnnnnnnnngcaactgtaaccatgtcgtgcaagatcata |
763 |
Q |
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| T |
42095389 |
tcttggaagtgttttttttgcaactgtaaccgtgtcgtgcaagatcata |
42095341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 803 - 890
Target Start/End: Complemental strand, 42095301 - 42095214
Alignment:
| Q |
803 |
atcattaatgtatttatttatattgttgaaggtatttcatttgtgattgtataatggttatatagttaatgcggtggatattcttcga |
890 |
Q |
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| T |
42095301 |
atcattaatgtatttatttatattgttgaaggtatttcatttgtgattgtataatggttatatagttaatgcggtggatatttttcga |
42095214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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