View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21188_low_2 (Length: 549)
Name: NF21188_low_2
Description: NF21188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21188_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 142 - 534
Target Start/End: Complemental strand, 34303271 - 34302879
Alignment:
| Q |
142 |
cttacgaacatctagtaagttgtttatataaattgtccgaaacagtcttacaagggcttatgtcggtagaaaagctcaaacaagtcaattcaaatatgcc |
241 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34303271 |
cttaagaacatctagtaagttgtttatataaattgtccgaaacagtcttacaagggcttatgtcggtagataagctcaaacaagtcaattcaaatatgcc |
34303172 |
T |
|
| Q |
242 |
ctatttgtgaatagataaaaataatcttcttgaatgggataacaaaagtatagtcaacatcattaaggtgcataaatcaaccactaatgatcaattaact |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34303171 |
ctatttgtgaatagataaaaataatcttcttgaatgggataacaaaagtatagtcaacatcattaaggtgcataaatcaaccactaatgatcaattaact |
34303072 |
T |
|
| Q |
342 |
aaatgctttattgaattgatttaacctataaaaggaatatttcaaaatatggattggatggacaataccttagtgacatatctacaacccttctctccat |
441 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34303071 |
aaatgctttattgaattgatttaacctaaaaaaggaatatttcaaaatatggattggatggacaataccttagtgacatatctacaacccttctctccat |
34302972 |
T |
|
| Q |
442 |
cagtgataataagcagcttcaacttgtcatgccacagagacatgacaacttcttcattctcaggatctttttgtgtaagaaattgaacttcat |
534 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34302971 |
cagtgataataagcagcttcaacttgtcatgccacagagacatgacaacttcttcattctcaggatctttttgtgtaagaaattgaacttcat |
34302879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 34303436 - 34303288
Alignment:
| Q |
1 |
tgatggatgaatagtttaagattacaataggaattgtagctcaaatatcggccacatttcaataaacagtttaagtaagcacttttagtacaagcttttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
34303436 |
tgatggatgaatagtttaagattacaataggaattgtagctcaaatatcggccacatttcaatatacagtttaagtaagcacttttagtataagcttttg |
34303337 |
T |
|
| Q |
101 |
tcaagctagttataaactctttcataagctactatgaagagcttacgaa |
149 |
Q |
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| |||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
34303336 |
tgaagctagttataaactgtttcataagctactatgaagaacttacgaa |
34303288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 27807210 - 27807260
Alignment:
| Q |
181 |
aaacagtcttacaagggcttatgtcggtagaaaagctcaaacaagtcaatt |
231 |
Q |
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|||||||||||||| ||||||||| ||||||||| ||||| ||||||||| |
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| T |
27807210 |
aaacagtcttacaaatgcttatgtcagtagaaaagttcaaataagtcaatt |
27807260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 2457036 - 2457090
Alignment:
| Q |
181 |
aaacagtcttacaagggcttatgtcggtagaaaagctcaaacaagtcaattcaaa |
235 |
Q |
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||||||||||||||| ||||||||||||||| || |||||| ||| |||| |||| |
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| T |
2457036 |
aaacagtcttacaagtgcttatgtcggtagataatctcaaataagccaatccaaa |
2457090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 41057240 - 41057313
Alignment:
| Q |
171 |
aaattgtccgaaacagtcttacaagggcttatgtcggtagaaaagctcaaacaagtcaattcaaatatgcccta |
244 |
Q |
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||||| ||| ||||||||| ||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||||| |
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| T |
41057240 |
aaattctcccaaacagtctcacaagtgcttatgcatgtagataagctcaaataagccaattcaaataggcccta |
41057313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 1821928 - 1821980
Alignment:
| Q |
185 |
agtcttacaagggcttatgtcggtagaaaagctcaaacaagtcaattcaaata |
237 |
Q |
| |
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||||||||||| | ||||||||||| ||||||||| ||||||||||||||| |
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| T |
1821928 |
agtcttacaagtgtttatgtcggtatctaagctcaaataagtcaattcaaata |
1821980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 1856373 - 1856425
Alignment:
| Q |
185 |
agtcttacaagggcttatgtcggtagaaaagctcaaacaagtcaattcaaata |
237 |
Q |
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||||||||||| | ||||||||||| ||||||||| ||||||||||||||| |
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| T |
1856373 |
agtcttacaagtgtttatgtcggtatctaagctcaaataagtcaattcaaata |
1856425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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