View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21188_low_5 (Length: 260)

Name: NF21188_low_5
Description: NF21188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21188_low_5
NF21188_low_5
[»] chr4 (3 HSPs)
chr4 (25-245)||(43120079-43120300)
chr4 (142-244)||(34941148-34941250)
chr4 (143-245)||(45120101-45120203)
[»] chr1 (1 HSPs)
chr1 (148-219)||(24888189-24888260)
[»] chr7 (2 HSPs)
chr7 (142-245)||(11454791-11454894)
chr7 (148-220)||(36441969-36442041)
[»] chr3 (3 HSPs)
chr3 (145-245)||(38140164-38140264)
chr3 (142-245)||(48191507-48191613)
chr3 (146-223)||(31814191-31814267)
[»] chr8 (1 HSPs)
chr8 (145-218)||(9015391-9015463)
[»] chr6 (1 HSPs)
chr6 (142-170)||(15880150-15880178)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 25 - 245
Target Start/End: Complemental strand, 43120300 - 43120079
Alignment:
Q  25 gctaatattagccaacactta-ttattttcactaattatatgagagcatagagattcttgctaatctatgtggtaaatggtaatggtataccattgtgaa 123  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43120300 gctaatattagccaacacttaattattttcactaattatatgagaggatagagattcttgctaatctatgtggtaaatggtaatgttataccattgtgaa 43120201  T
Q  124 ggtttgtttgtagattgtgggtgtgtttgttttaaggcaagaaattatattttttggaatgacatttttagaaatactattttaaggaataacattcata 223  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43120200 ggtttgtttgtagattgtgggtgtatttgttttaaggcaagaaattatattttttggaatgacatttttaaaaatactattttaaggaataacattcata 43120101  T
Q  224 catatgtgttcggtaaaaattt 245  Q
    ||||||||||||||||||||||    
T  43120100 catatgtgttcggtaaaaattt 43120079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 34941250 - 34941148
Alignment:
Q  142 gggtgtgtttgttttaaggcaagaaattatattttttggaatgacatttttagaaatactattttaaggaataacattcatacatatgtgttcggtaaaa 241  Q
    |||||||||||||| |||||||||||||| |||  || |||||||||| |||| |||| ||||| |||||||||||||| |||  ||||||| |||||||    
T  34941250 gggtgtgtttgtttcaaggcaagaaattacattccttagaatgacattcttaggaataatatttcaaggaataacattcctacccatgtgtttggtaaaa 34941151  T
Q  242 att 244  Q
    |||    
T  34941150 att 34941148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 245
Target Start/End: Original strand, 45120101 - 45120203
Alignment:
Q  143 ggtgtgtttgttttaaggcaagaaattatattttttggaatgacatttttagaaatactattttaaggaataacattcatacatatgtgttcggtaaaaa 242  Q
    ||||||||||||| || | || |||||| |||  |||||||||||||| ||| |||| ||||| || ||||||||||| |||  ||||||| | ||||||    
T  45120101 ggtgtgtttgtttcaacgaaataaattacattcattggaatgacatttctaggaataatatttcaatgaataacattcttactcatgtgtttgataaaaa 45120200  T
Q  243 ttt 245  Q
    |||    
T  45120201 ttt 45120203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 24888189 - 24888260
Alignment:
Q  148 gtttgttttaaggcaagaaattatattttttggaatgacatttttagaaatactattttaaggaataacatt 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||| |||| ||||  |||||||||||||    
T  24888189 gtttgttttaaggcaagaaattacattttttggaatgacatttctaggaataatattccaaggaataacatt 24888260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 11454894 - 11454791
Alignment:
Q  142 gggtgtgtttgttttaaggcaagaaattatattttttggaatgacatttttagaaatactattttaaggaataacattcatacatatgtgttcggtaaaa 241  Q
    ||||||||||||||||| | | |||||||||||||||||||||| ||| | | | ||| |||||| ||||||||||||  | | |||||||| || ||||    
T  11454894 gggtgtgtttgttttaaagtaggaaattatattttttggaatgatattctcaaacataatatttttaggaataacattttttcttatgtgtttggaaaaa 11454795  T
Q  242 attt 245  Q
    ||||    
T  11454794 attt 11454791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 36441969 - 36442041
Alignment:
Q  148 gtttgttttaaggcaagaaattatattttttggaatgacatttttagaaatactattttaaggaataacattc 220  Q
    |||||||| |||| |||||||||||||  ||| ||||| |||| ||| |||| ||||  ||||||||||||||    
T  36441969 gtttgtttcaaggtaagaaattatattccttgaaatgatatttctaggaataatattccaaggaataacattc 36442041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 245
Target Start/End: Original strand, 38140164 - 38140264
Alignment:
Q  145 tgtgtttgttttaaggcaagaaattatattttttggaatgacatttttagaaatactattttaaggaataacattcatacatatgtgttcggtaaaaatt 244  Q
    ||||||||||| |||  ||||||||| |||| ||||||||| ||| |  |||||| |||||| ||||||||||||| ||  |||||||| ||||| ||||    
T  38140164 tgtgtttgtttcaagataagaaattacatttattggaatgatattctccgaaataatatttttaggaataacattcctatctatgtgtttggtaagaatt 38140263  T
Q  245 t 245  Q
    |    
T  38140264 t 38140264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 48191613 - 48191507
Alignment:
Q  142 gggtgtgtttgttttaaggcaagaaattatattttttggaatgacatttttag---aaatactattttaaggaataacattcatacatatgtgttcggta 238  Q
    |||||||||||||| ||| ||||||||||||||  ||| |||| |||| ||||    |||| ||||||| ||||||||| || ||| ||||| || ||||    
T  48191613 gggtgtgtttgtttaaagtcaagaaattatattccttgaaatgtcattcttaggaataataatattttatggaataacaatcctacctatgtatttggta 48191514  T
Q  239 aaaattt 245  Q
    |||||||    
T  48191513 aaaattt 48191507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 31814267 - 31814191
Alignment:
Q  146 gtgtttgttttaaggcaagaaattatattttttggaatgacatttttagaaatactattttaaggaataacattcata 223  Q
    ||||||||||||||| ||||||||| ||| |||  ||||| ||||| || |||| |||||| ||||| ||||||||||    
T  31814267 gtgtttgttttaaggtaagaaattacattcttt-taatgatattttcaggaataatatttttaggaacaacattcata 31814191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 9015463 - 9015391
Alignment:
Q  145 tgtgtttgttttaaggcaagaaattatattttttggaatgacatttttagaaatactattttaaggaataacat 218  Q
    |||||||||||||||| || | ||||  ||||||| ||||| |||  |||||||| ||||||||||||||||||    
T  9015463 tgtgtttgttttaaggtaatagattac-ttttttgaaatgatattcctagaaataatattttaaggaataacat 9015391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 170
Target Start/End: Complemental strand, 15880178 - 15880150
Alignment:
Q  142 gggtgtgtttgttttaaggcaagaaatta 170  Q
    |||||||||||||||||||||||||||||    
T  15880178 gggtgtgtttgttttaaggcaagaaatta 15880150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University