View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21188_low_6 (Length: 247)
Name: NF21188_low_6
Description: NF21188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21188_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 39514766 - 39514527
Alignment:
| Q |
1 |
caatttgttaccaattaatcgattatataggcaactttattgattagaagttttttgtagtaacattaatcgattatgaatctcacaataatcgaatacg |
100 |
Q |
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| T |
39514766 |
caatttgttaccaattaatcgattatataggcaactttattgattagaagttttttgtagtaacattaatcgattatgaatctcacaataatcgaatacg |
39514667 |
T |
|
| Q |
101 |
agcttcgtgtgggttgacattgatttcagcattgccaataatcaattaagtgattgagtataattgattaagttagtatctactcgttatttgattttaa |
200 |
Q |
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| T |
39514666 |
agcttcatgtgggttgacattgatttcagcattgccaataatcaattaagtgattgagtataattgattaagttagtatctactcgttatttgattttaa |
39514567 |
T |
|
| Q |
201 |
atcatcaattaagttgaaaattgataggtatcctttgcta |
240 |
Q |
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| T |
39514566 |
atcatcaattaagttgaaaattgataggtatcctgtgcta |
39514527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 39527658 - 39527446
Alignment:
| Q |
1 |
caatttgttaccaattaatcgattatataggca-actttattgattagaagttttttgtagtaacatta--atcgattatgaatctcacaataatcgaat |
97 |
Q |
| |
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| T |
39527658 |
caatatgttagcaattgattgattatataggcagaattaattgattacaagtttttc-tagaaacattactatcgattatgaatctcactctaatcgatt |
39527560 |
T |
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| Q |
98 |
acgagcttcgtgtgggttgacattgatttcagcattgccaataatcaattaagtgattgagtataattgattaagttagtatctactcgttatttgattt |
197 |
Q |
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| T |
39527559 |
ttgagctccctgtggtcggacattgatttcagc-----ccataatcaattaattgagtgagcttaatatattacgttagtatatattgatcatttgattt |
39527465 |
T |
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| Q |
198 |
taaatcatcaattaagttg |
216 |
Q |
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| T |
39527464 |
tgaataatcaattaagttg |
39527446 |
T |
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