View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21188_low_8 (Length: 237)
Name: NF21188_low_8
Description: NF21188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21188_low_8 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 39515215 - 39514994
Alignment:
| Q |
16 |
aaattcaacgggagatgttttcattacacacacggtatgcataaattaacttcaaggttttgttctgttcattacctaccatgtaatatgttctttcccg |
115 |
Q |
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| T |
39515215 |
aaattcaacgggagatgttttcattacacacacggtatgcataaattaacttcaaggttttgttctgttcattacctactatgtaatatgttctttcccg |
39515116 |
T |
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| Q |
116 |
ttgatgataaacaacatgtgcaggttctatcaggtgaatacattctacgtttcgcagtaggagcaccgttgacagaagtgaggcatgtccatgcagcgtg |
215 |
Q |
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| T |
39515115 |
ttgatgataaacaacatgtgcaggttctatcaggtgaatacattctacgtctcgcagtaggagcaccgttgacagaagtgaggcatgtccatgcagcgtg |
39515016 |
T |
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| Q |
216 |
gcagattttgcaagaaaaagcc |
237 |
Q |
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| T |
39515015 |
gcagattttgcaagaaaaagcc |
39514994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 39528090 - 39527885
Alignment:
| Q |
16 |
aaattcaacgggagatgttttcattacacacacggtatgcataaattaacttcaaggttttgttctgttcattacctaccatgtaatatgttctttcccg |
115 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||| || |||| | | | |
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| T |
39528090 |
aaattcaacgggaaatgttttcattacacacacggtatgcataaattaacttcgggcttttgttctgtttatagcctatga----------------ctg |
39528007 |
T |
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| Q |
116 |
ttgatgataaacaacatgtgcaggttctatcaggtgaatacattctacgtttcgcagtaggagcaccgttgacagaagtgaggcatgtccatgcagcgtg |
215 |
Q |
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| T |
39528006 |
ttgatgataaacaatatgtgcaggttctatcaggtgagtacattctacgtttcgcagtaggagcacctttgacagaaatgaggcatgtcagtgcggcgtg |
39527907 |
T |
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| Q |
216 |
gcagattttgcaagaaaaagcc |
237 |
Q |
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| T |
39527906 |
gcagattttgcaagaaaaagcc |
39527885 |
T |
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Back To:
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