View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21189_high_1 (Length: 324)
Name: NF21189_high_1
Description: NF21189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21189_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 6357970 - 6357659
Alignment:
| Q |
1 |
tattttgcgtacatgtggttccttgaaagttcctcgaagaattcttgagtcagatagtttgaagattttagatgccttgcaaaatatggttgtcgaagaa |
100 |
Q |
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| T |
6357970 |
tattttgcgtacatgtggttccttgaaagttcctcgaagaattcttgagtcagatagtttgaagattttagatgccttgcaaaatatggttgtcgaagaa |
6357871 |
T |
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| Q |
101 |
ggaaacatagctactttgattatgtggaacttgtggtgtacaatgaataaatttgtttttgaagaaacta----tgtgactgattctacaattgattcga |
196 |
Q |
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| T |
6357870 |
ggaaacatagctactttgattatgtggaacttgtggtgtacaatgaataaatttgtttttgaagaaactaagattgtgactgattctacaatcgattcga |
6357771 |
T |
|
| Q |
197 |
tcttttcccagctctatatctcacgacgagcatttggtaactccaagtttgttggaaacaggttgacaacaatactttgacactaaatgttaatggtagt |
296 |
Q |
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| T |
6357770 |
tcttttcccagctctatatctcacaacgagcatttggtaactccaagtttgttggaaacatgttgacaacaatactttgacactaaatgttaatggtagt |
6357671 |
T |
|
| Q |
297 |
gcattaaggaac |
308 |
Q |
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| T |
6357670 |
gcattaaggaac |
6357659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 7588715 - 7588651
Alignment:
| Q |
100 |
aggaaacatagctactttgattatgtggaacttgtggtgtacaatgaataaatttgtttttgaag |
164 |
Q |
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| T |
7588715 |
aggaatcatagctcctttgatcatgtggaatatttggtgtataaggaataaatttgtctttgaag |
7588651 |
T |
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