View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21189_low_1 (Length: 371)
Name: NF21189_low_1
Description: NF21189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21189_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 24 - 363
Target Start/End: Original strand, 4664986 - 4665325
Alignment:
| Q |
24 |
tttcttccattcaccaagacaatatggttagtttatttccatggttttatctaatgtgtataaacaaaccggtactgtattatgcacaaacttattttac |
123 |
Q |
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| T |
4664986 |
tttcttccattcaccaagacaatatggttagtttattttcatggctttatctaatgtgtataaacaaaccggtactgtattatgcacaaacttattttac |
4665085 |
T |
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| Q |
124 |
accatttgattactaaatctcgtcatatttcttttgtctttcttttcccgttcctattcaatatgacaatgcaaaattatatggtatcacttctttttca |
223 |
Q |
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| T |
4665086 |
accatttgattacttaatctcgtcatatttcttttgtctttcttttcccgttcctattcaatatggcaatgcaaaattatatggtatcacttctttttca |
4665185 |
T |
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| Q |
224 |
ggaatgatttgtataacttgttaaaagctaccaaagaaaatttgacgtcaaaacttgcttaaagctaccaaagtgtttcacgagaaaaatttgatcttaa |
323 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4665186 |
ggaatgatttgtataacttgttaaaagctaccaaaaaaaatttgacgtcaaaacttgcttaaagctaccaaagtgtttcacgaaaaaaatttgatcttaa |
4665285 |
T |
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| Q |
324 |
tttagtctctaattcagcaaacaaaaatttagtgtctctg |
363 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |
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| T |
4665286 |
tttagtctctaatacagcaaacaaaaatttagtgtctctg |
4665325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 4668154 - 4668218
Alignment:
| Q |
24 |
tttcttccattcaccaagacaatatggttagtttatttccatggttttatctaatgtgtataaac |
88 |
Q |
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||||||||||||||||||||| || ||||||||||||||| ||| ||| ||||||||| |||||| |
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| T |
4668154 |
tttcttccattcaccaagacactacggttagtttatttccgtggctttgtctaatgtgcataaac |
4668218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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