View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2118_high_15 (Length: 244)
Name: NF2118_high_15
Description: NF2118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2118_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 25 - 236
Target Start/End: Complemental strand, 32148886 - 32148675
Alignment:
| Q |
25 |
taataatggcaacatcgtgttaaatacaaagaaacgtgacaatcatatttgacgttttttatttaacatctcaaatggcaactctatcaatatcccatgc |
124 |
Q |
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| T |
32148886 |
taataatggcaacatcgtgttaaatacaaagaaacgtgacaatcatatttgacgttttttatttaacatctcaaatggcaactctatcaatatcccatgc |
32148787 |
T |
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| Q |
125 |
aatataaatagagatgcctcaacaccatcttctcaaactcaataccatacactaatacactatttttactctcaagccatggctaaatacaatttccaac |
224 |
Q |
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| T |
32148786 |
aatataaatagagatgcctcaacaccatcttctcaaactcaataccatacactaatacactatttttactctcaagccatggctaaatacaatttccaac |
32148687 |
T |
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| Q |
225 |
acttcattacaa |
236 |
Q |
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| T |
32148686 |
acttcattacaa |
32148675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 244
Target Start/End: Complemental strand, 32139387 - 32139277
Alignment:
| Q |
125 |
aatataaatagagatgcctcaacaccatcttctcaaactcaataccatacactaatacactatttttactctcaagccatggctaaatacaatttccaac |
224 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||| ||| || || ||||| ||| |||||||||||| | |||||| |||| |
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| T |
32139387 |
aatataaatagacctgcctcaacaccatcttcacaaactcaatatcatttac---------atctttacactctagccatggctaattccaattttcaac |
32139297 |
T |
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| Q |
225 |
acttcattacaatccttctc |
244 |
Q |
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| T |
32139296 |
acttcattacaatccttctc |
32139277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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