View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2118_high_6 (Length: 396)
Name: NF2118_high_6
Description: NF2118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2118_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 12924136 - 12924519
Alignment:
| Q |
1 |
tacattttcaacacctactaacagcattaacagccacatcatccaagtatatgaatgcaattataaaccttccatcaaaagactaatacaaattaagaac |
100 |
Q |
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| T |
12924136 |
tacattttcaacacctactaacagcattaacagccacatcatccaagtatatgaatgcaattataaaccttccatcaaaagactaatacaaattaagaac |
12924235 |
T |
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| Q |
101 |
aaacaaaatcacctcaagtctaagaatggatattgtatcacttgcacatcaatgaatagaaaatcaacctcagtgaaatggctcatgttggcaccagtct |
200 |
Q |
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| T |
12924236 |
aaacaaaatcacctcaagtctaagaacggatattgtatcacttgcacatcaatgaatagaaaatcaacctcagtgaaatggctcatgttggcaccagtct |
12924335 |
T |
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| Q |
201 |
acaatcatcatcaggagtgaagaaaagaatagctaatagtgcaatgaaccaaatgacaaatagaaacagaaatggtttcttcttccgcgaaaccacttga |
300 |
Q |
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| T |
12924336 |
acaatcatcatcaggagtgaagaaaagaatagctaatagtgcaatgaacaaaatgacaaatagaaacagaaatggtttcttcttccgcgaaaccacttga |
12924435 |
T |
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| Q |
301 |
ggttgcgactgcatctgaatttcctcctttggcagtgcatcgcgtttgagatcttgcaaaacatactcaattatctcatcccta |
384 |
Q |
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| T |
12924436 |
ggttgcgattgcatctgaatttcctcctttggcagtgcatcgcgtctgagatcttgcaaaacatactcaattatctcatcccta |
12924519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 30791522 - 30791168
Alignment:
| Q |
1 |
tacattttcaacacctactaacagcattaa-cagccacatcatccaagtatatgaatgcaattataaa-ccttccatcaaaagactaatacaaattaaga |
98 |
Q |
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| T |
30791522 |
tacattttcaacacctactaacaacattaatcagccacatcatccaagt-------tacagtaataaaaccttccatcaaaagactaatacaaattgaga |
30791430 |
T |
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| Q |
99 |
acaaacaaaatcacctcaagtctaagaatggatattgtatcacttgcacatcaatgaatagaaaatcaacctcagtgaaatggctcatgttggcaccagt |
198 |
Q |
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| T |
30791429 |
acaaaccaaatcacctgaagtctaagaacagatattgtatcacttgcacatcaatgagtaaaaaa--------------------catgttggcacaagt |
30791350 |
T |
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| Q |
199 |
ctacaatcatcatcaggagtgaagaaaagaatagctaatagtgcaatgaaccaaatgacaaatagaaacagaaatggtttcttcttccgcgaaaccactt |
298 |
Q |
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| T |
30791349 |
ctacaatcatcatcaggagtgaagaaaagcata--taatgctgcaatgaaccaaatgacaca--gaaacaaaaatggtttcttcttatccaaaagcactt |
30791254 |
T |
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| Q |
299 |
gaggttgcgactgcatctgaatttcctcctttggcagtgcatcgcgtttgagatcttgcaaaacatactcaattatctcatcccta |
384 |
Q |
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| T |
30791253 |
gaggttgcgatcgcgtctgaattccctcctctggcagtgcattgtgtttgagatcttgcaaaacatattcaactatctcatcccta |
30791168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 96 - 384
Target Start/End: Original strand, 22382395 - 22382671
Alignment:
| Q |
96 |
agaacaaacaaaatcacctcaagtctaagaatggatattgtatcacttgcacatcaatgaatagaaaatcaacctcagtgaaatggctcatgttggcacc |
195 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| || |||||||||| |
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| T |
22382395 |
agaacaaaccaaatcacctcaagtctaagaacagatattgtatcacttgcacatcaatgtatagaaa------------------ccttatgttggcact |
22382476 |
T |
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| Q |
196 |
agtctacaatcatcatcaggagtgaagaaaagaatagctaatagtgcaatgaaccaaatgacaaatagaaacagaaatggtttcttcttcc------gcg |
289 |
Q |
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|| | |||||||||||| | |||| ||||||| |||||||||| |||||||||| |||| || | ||||||| ||||| ||| ||||||| || |
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| T |
22382477 |
aggcgacaatcatcatcggaagtgtagaaaagcatagctaatactgcaatgaacaaaattgcacagagaaacaaaaatgcttttttcttccccaaaagca |
22382576 |
T |
|
| Q |
290 |
aaaccacttgaggttgcgactgcatctgaatttcctcctttggcagtgcatcgcgtttgagatcttgcaaaacatactcaattatctcatcccta |
384 |
Q |
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|| |||||||||||| | || |||||||| ||||||||||||| |||| |||||||||||| ||||||| | ||||| |||||||||||| |
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| T |
22382577 |
caagcacttgaggttgtaatcgcgtctgaattccctcctttggcagagcattgcgtttgagatcgtgcaaaatgtcctcaaccatctcatcccta |
22382671 |
T |
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