View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2118_high_9 (Length: 341)
Name: NF2118_high_9
Description: NF2118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2118_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 55081638 - 55081945
Alignment:
| Q |
16 |
attcactaactttataattgattttctgtagtatttcaacaaataggtaaatgctttgtttacaatatacaaattacaatagttgcgaagatatgttaca |
115 |
Q |
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| T |
55081638 |
attcactaactttataattgattttctgtagtatttctacaaataggtaaatgctttgtttacaatatacaaattacaatagttgcgaagatacgttaca |
55081737 |
T |
|
| Q |
116 |
gggccaaacataataaaaaatctttactaatatacactcttactcctattaagatcatagaaacaaattgcatcaatttttcaccacaaagctccattct |
215 |
Q |
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| T |
55081738 |
gggccaaacataataaaaaatctttactattatacactcttactcctattaagatcatagaaacaaattgcatcaatttttcaccacaaagctccattct |
55081837 |
T |
|
| Q |
216 |
tgtcataaaattttctcctgattggatgatccacaaagcaaattaaccaggggcaaattctgcacacaaggaaccaaatctttgtcctagcctctgctaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55081838 |
tgtcataaaattttctcctgattggatgatccacaaagcaaattaaccagggacaaattctgcacacaaggaaccaaatctttgtcctagcctctgctaa |
55081937 |
T |
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| Q |
316 |
taggaacc |
323 |
Q |
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|||||||| |
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| T |
55081938 |
taggaacc |
55081945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 29272029 - 29272118
Alignment:
| Q |
16 |
attcactaactttataattgattttctgtagtatttcaacaaataggtaaatgctttgt----ttacaatatacaaattacaatagttgc |
101 |
Q |
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|||||| |||||||||| | ||| | |||||||||| || ||| ||||||| | ||||| ||||||| ||||||||||||||||||| |
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| T |
29272029 |
attcaccaactttataaattattctttgtagtatttgaagaaacaggtaaaggatttgtatatttacaatctacaaattacaatagttgc |
29272118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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