View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2118_low_1 (Length: 620)

Name: NF2118_low_1
Description: NF2118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2118_low_1
NF2118_low_1
[»] chr2 (4 HSPs)
chr2 (47-604)||(39693579-39694138)
chr2 (13-60)||(39693523-39693570)
chr2 (392-456)||(2336696-2336762)
chr2 (399-445)||(2323694-2323740)
[»] chr4 (6 HSPs)
chr4 (392-446)||(29802613-29802667)
chr4 (400-498)||(31957580-31957681)
chr4 (395-445)||(23210827-23210876)
chr4 (399-454)||(30788297-30788354)
chr4 (405-446)||(2041166-2041207)
chr4 (396-425)||(50400019-50400048)
[»] chr7 (2 HSPs)
chr7 (399-446)||(23714892-23714939)
chr7 (392-443)||(7192787-7192838)
[»] chr1 (3 HSPs)
chr1 (400-445)||(7373363-7373408)
chr1 (412-445)||(8240396-8240429)
chr1 (391-443)||(47493819-47493871)
[»] chr8 (2 HSPs)
chr8 (392-438)||(11970314-11970360)
chr8 (392-446)||(40991825-40991879)
[»] chr3 (1 HSPs)
chr3 (392-446)||(41857496-41857550)
[»] chr6 (2 HSPs)
chr6 (391-428)||(10498844-10498881)
chr6 (392-445)||(29028162-29028215)


Alignment Details
Target: chr2 (Bit Score: 521; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 47 - 604
Target Start/End: Original strand, 39693579 - 39694138
Alignment:
Q  47 aggtgtactttggtttggttatgtcaagcttacaactgatgttgatttgtgattgatcaactttacaagaagtttacaatgacaccacatacatgaacac 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39693579 aggtgtactttggtttggttatgtcaagcttacaactgatgttgatttgtgattgatcaactttacaagaagtttacaatgacaccacatacatgaacac 39693678  T
Q  147 ttgaaaatcatggttaattctctctaaatgcatggttgataaagttcatagaagattaatgagtggagaaattgcttttggtgttggagtccattgttgt 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39693679 ttgaaaatcatggttaattctctctaaatgcatggttgataaagttcatagaagattaatgagtggagaaattgcttttggtgttggagtccattgttgt 39693778  T
Q  247 gatgattttctttttgtttcaatagaaatgatgaagaatcaaggtcgtagattttagtcgcagatagtggagtgctactttttgatgtcagaccctaatg 346  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39693779 gatgattttctttctgtttcaatagaaatgatgaagaatcaaggtcgtagattttagtcgcagatagtggagtgctactttttgatgtcaaaccctaatg 39693878  T
Q  347 cgtggcaa--gtgagttaaaaatctcacgttatttataagtgagagtataaactcaatgtcttaagattttgggttaagatatggtgtccaactcacttg 444  Q
    ||| ||||  |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  39693879 cgtagcaagtgtgagttaaaaatctcacgttatttataagtgagagcataaactcaatgccttaagattttgggttaagatgtggtgtccaactcacttg 39693978  T
Q  445 tggttgctctgacctagtgtgtatgatcctctgaactccactcatgactcaacaaaccctaacaaacaacattgcctaactgttttctaacaggggatgc 544  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39693979 tggttgctctgacctagtgtgtatgatcctctgaactccactcatgactcaacaaaccctaacaaacaacattgcctaactgttttctaacaggggatgc 39694078  T
Q  545 atcttgtgatagttttggtggtggagaaatcagtgatttattttattgaaagaaaatcat 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39694079 atcttgtgatagttttggtggtggagaaatcagtgatttattttactgaaagaaaatcat 39694138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 39693523 - 39693570
Alignment:
Q  13 attatactaataaaaaagcctagaacaaagcactaggtgtactttggt 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39693523 attatactaataaaaaagcctagaacaaagcactaggtgtactttggt 39693570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 392 - 456
Target Start/End: Original strand, 2336696 - 2336762
Alignment:
Q  392 ataaactcaatgtcttaagattttgggttaagatatggtgtccaactcact--tgtggttgctctga 456  Q
    ||||| |||||| ||||||||||||||||||||| ||||||||||||||||  ||||||||||||||    
T  2336696 ataaattcaatgccttaagattttgggttaagatgtggtgtccaactcacttgtgtggttgctctga 2336762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 445
Target Start/End: Original strand, 2323694 - 2323740
Alignment:
Q  399 caatgtcttaagattttgggttaagatatggtgtccaactcacttgt 445  Q
    ||||| |||||| |||| ||||||||| |||||||||||||||||||    
T  2323694 caatgccttaaggttttaggttaagatgtggtgtccaactcacttgt 2323740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 392 - 446
Target Start/End: Original strand, 29802613 - 29802667
Alignment:
Q  392 ataaactcaatgtcttaagattttgggttaagatatggtgtccaactcacttgtg 446  Q
    |||||| ||||| |||||| ||||| |||||||||||||||||||||||||||||    
T  29802613 ataaacccaatgccttaaggttttgtgttaagatatggtgtccaactcacttgtg 29802667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 498
Target Start/End: Original strand, 31957580 - 31957681
Alignment:
Q  400 aatgtcttaagattttgggttaagatatggtgtccaactcactt--gtggttgctc-tgacctagtgtgtatgatcctctgaactccactcatgactcaa 496  Q
    |||| |||||| |||||||||||||| |||||||||||||||||  |||||||||| || |||  || | ||||||| |||| |||| |||||||| |||    
T  31957580 aatgccttaaggttttgggttaagatgtggtgtccaactcacttgcgtggttgctcttgccctgatgaggatgatcccctgagctcccctcatgacccaa 31957679  T
Q  497 ca 498  Q
    ||    
T  31957680 ca 31957681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 445
Target Start/End: Complemental strand, 23210876 - 23210827
Alignment:
Q  395 aactcaatgtcttaagattttgggttaagatatggtgtccaactcacttgt 445  Q
    |||||||||||||||||||| || ||||||| || ||||||||||||||||    
T  23210876 aactcaatgtcttaagatttagg-ttaagatgtgatgtccaactcacttgt 23210827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 454
Target Start/End: Original strand, 30788297 - 30788354
Alignment:
Q  399 caatgtcttaagattttgggttaagatatggtgtccaactcactt--gtggttgctct 454  Q
    |||||||||||| |||||||||||||| |||||| ||||||| ||  |||||||||||    
T  30788297 caatgtcttaaggttttgggttaagatgtggtgttcaactcaattgagtggttgctct 30788354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 446
Target Start/End: Original strand, 2041166 - 2041207
Alignment:
Q  405 cttaagattttgggttaagatatggtgtccaactcacttgtg 446  Q
    |||||| |||||||| ||||| ||||||||||||||||||||    
T  2041166 cttaaggttttgggtgaagatgtggtgtccaactcacttgtg 2041207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Original strand, 50400019 - 50400048
Alignment:
Q  396 actcaatgtcttaagattttgggttaagat 425  Q
    ||||||||||||||||||||||||||||||    
T  50400019 actcaatgtcttaagattttgggttaagat 50400048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 399 - 446
Target Start/End: Complemental strand, 23714939 - 23714892
Alignment:
Q  399 caatgtcttaagattttgggttaagatatggtgtccaactcacttgtg 446  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  23714939 caatgccttaagattttgggtgaagatgtggtgtccaactcacttgtg 23714892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 443
Target Start/End: Original strand, 7192787 - 7192838
Alignment:
Q  392 ataaactcaatgtcttaagattttgggttaagatatggtgtccaactcactt 443  Q
    ||||||||||||||||||| ||||| || ||||| || ||||||||||||||    
T  7192787 ataaactcaatgtcttaaggttttgagtaaagatgtgatgtccaactcactt 7192838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 400 - 445
Target Start/End: Original strand, 7373363 - 7373408
Alignment:
Q  400 aatgtcttaagattttgggttaagatatggtgtccaactcacttgt 445  Q
    |||||||||| ||||| ||||||||| |||||||||||||||||||    
T  7373363 aatgtcttaaaatttttggttaagatgtggtgtccaactcacttgt 7373408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Complemental strand, 8240429 - 8240396
Alignment:
Q  412 ttttgggttaagatatggtgtccaactcacttgt 445  Q
    |||||||||||||| |||||||||||||||||||    
T  8240429 ttttgggttaagatgtggtgtccaactcacttgt 8240396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 47493819 - 47493871
Alignment:
Q  391 tataaactcaatgtcttaagattttgggttaagatatggtgtccaactcactt 443  Q
    |||||||||||| |||||| |||||| ||||||||||   |||||||||||||    
T  47493819 tataaactcaatatcttaaaattttgagttaagatattacgtccaactcactt 47493871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 392 - 438
Target Start/End: Original strand, 11970314 - 11970360
Alignment:
Q  392 ataaactcaatgtcttaagattttgggttaagatatggtgtccaact 438  Q
    |||||||||||| ||| ||||||||||||||||| ||||| ||||||    
T  11970314 ataaactcaatgcctttagattttgggttaagatgtggtgcccaact 11970360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 392 - 446
Target Start/End: Original strand, 40991825 - 40991879
Alignment:
Q  392 ataaactcaatgtcttaagattttgggttaagatatggtgtccaactcacttgtg 446  Q
    |||||| ||||| || ||| |||||||||||||| ||||||||||||||| ||||    
T  40991825 ataaacccaatgcctcaaggttttgggttaagatgtggtgtccaactcacctgtg 40991879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 392 - 446
Target Start/End: Original strand, 41857496 - 41857550
Alignment:
Q  392 ataaactcaatgtcttaagattttgggttaagatatggtgtccaactcacttgtg 446  Q
    |||||||||||| |||||  |||||||||||||| || ||| |||||||||||||    
T  41857496 ataaactcaatgacttaaagttttgggttaagatgtgatgttcaactcacttgtg 41857550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 428
Target Start/End: Complemental strand, 10498881 - 10498844
Alignment:
Q  391 tataaactcaatgtcttaagattttgggttaagatatg 428  Q
    |||||||||||||||||||  |||||||||||||||||    
T  10498881 tataaactcaatgtcttaaagttttgggttaagatatg 10498844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 445
Target Start/End: Original strand, 29028162 - 29028215
Alignment:
Q  392 ataaactcaatgtcttaagattttgggttaagatatggtgtccaactcacttgt 445  Q
    |||||||||||||| |||  ||||| |||||||| |||||||||||| ||||||    
T  29028162 ataaactcaatgtcctaatgttttgagttaagatgtggtgtccaacttacttgt 29028215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University