View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2118_low_10 (Length: 366)
Name: NF2118_low_10
Description: NF2118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2118_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 355
Target Start/End: Original strand, 34409194 - 34409529
Alignment:
| Q |
20 |
ataatgtcatggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34409194 |
ataatgtcatggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtc |
34409293 |
T |
|
| Q |
120 |
aacatgcttttggaccaaaattgggtctatatatcattgttccacaacaactactcgttgaggttggtacatgtattgcttatatggttactggaggcaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34409294 |
aacatgcttttggaccaaaattgggtctatatatcattgttccacaacaactactcgttgaggttggtacatgtattgcttatatggttactggaggcaa |
34409393 |
T |
|
| Q |
220 |
atcattgaagaaggttcaagaatctatatgcccaacatgtacaaaaattagaacttcctattggattgttatctttgcatctgtaaactttgttctctgt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34409394 |
atcattgaagaaggttcaagaatctatatgcccaacatgtacaaaaattagaacttcctattggattgttatctttgcatctgtaaactttgttctctgt |
34409493 |
T |
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| Q |
320 |
cagtgccccagcttcaactctatttctgctgtctct |
355 |
Q |
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| T |
34409494 |
cagtgccccagcttcaactctatttctgctgtctct |
34409529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 43853134 - 43853220
Alignment:
| Q |
26 |
tcatggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgag |
112 |
Q |
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| T |
43853134 |
tcatggataatcaccctctacactctatggcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatgag |
43853220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 7979508 - 7979381
Alignment:
| Q |
26 |
tcatggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatg |
125 |
Q |
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|||||||| |||||||| | ||| || |||||||||||||| |||||||||||||| || |||| | | ||||| || || ||||| | |||||||||| |
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| T |
7979508 |
tcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttccgggaaaacgctttgatagataccatgaattaggtcaacatg |
7979409 |
T |
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| Q |
126 |
cttttggaccaaaattgggtctatatat |
153 |
Q |
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| T |
7979408 |
cttttgggaaaaaattaggtctttatat |
7979381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 171
Target Start/End: Complemental strand, 14198905 - 14198760
Alignment:
| Q |
26 |
tcatggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatg |
125 |
Q |
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|||||| | |||||||| | ||| |||||||||||||||| |||||||||||||| || || | | | || || || |||||||| || |||||| ||| |
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| T |
14198905 |
tcatggttcatcacattatacacgttatggcaaatggttgagatgcatgaaatggtacccgggaaacgtttcgatagatatcatgaactgggtcaatatg |
14198806 |
T |
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| Q |
126 |
cttttggaccaaaattgggtctatatatcattgttccacaacaact |
171 |
Q |
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| T |
14198805 |
cttttggtgaaaagttgggtctgtatattgttgtgccacaacaact |
14198760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 38827460 - 38827385
Alignment:
| Q |
46 |
cactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaa |
121 |
Q |
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|||| |||||||||||||||| ||||||||||| || || |||| ||||| || |||||||||||| | |||||| |
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| T |
38827460 |
cactatatggcaaatggttgagatgcatgaaatagttcccggaaagagattggataggtatcatgagttgggtcaa |
38827385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 42986447 - 42986374
Alignment:
| Q |
38 |
acattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatga |
111 |
Q |
| |
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||||||| |||| |||||||||| |||||||||||||| || |||||| ||||||||||| ||||||||| |
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| T |
42986447 |
acattgtacactgcatggcaaatgattgaaatgcatgaatccgtatcaggaaaaagatttgacaagtatcatga |
42986374 |
T |
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