View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2118_low_16 (Length: 278)

Name: NF2118_low_16
Description: NF2118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2118_low_16
NF2118_low_16
[»] chr7 (4 HSPs)
chr7 (9-217)||(40773197-40773403)
chr7 (218-255)||(18212973-18213010)
chr7 (219-255)||(32287404-32287440)
chr7 (219-255)||(49107887-49107923)
[»] chr5 (4 HSPs)
chr5 (217-255)||(38464312-38464350)
chr5 (218-253)||(2548464-2548499)
chr5 (218-253)||(14674333-14674368)
chr5 (217-255)||(6247692-6247730)
[»] chr8 (7 HSPs)
chr8 (218-255)||(16641909-16641946)
chr8 (218-253)||(18964274-18964309)
chr8 (217-255)||(29510232-29510270)
chr8 (29-62)||(12071651-12071684)
chr8 (218-255)||(25566912-25566949)
chr8 (217-254)||(38487156-38487193)
chr8 (218-254)||(36450694-36450730)
[»] chr6 (7 HSPs)
chr6 (220-255)||(12696411-12696446)
chr6 (218-255)||(34595216-34595253)
chr6 (218-254)||(4388163-4388199)
chr6 (217-253)||(8776907-8776943)
chr6 (217-257)||(17327589-17327629)
chr6 (219-255)||(27903963-27903999)
chr6 (219-255)||(31959232-31959268)
[»] chr4 (5 HSPs)
chr4 (218-257)||(5414101-5414140)
chr4 (217-255)||(40784035-40784073)
chr4 (217-255)||(53381529-53381567)
chr4 (219-252)||(12324005-12324038)
chr4 (217-254)||(17876249-17876286)
[»] scaffold0003 (1 HSPs)
scaffold0003 (217-255)||(236913-236951)
[»] chr1 (3 HSPs)
chr1 (217-255)||(42325641-42325679)
chr1 (217-254)||(7918153-7918190)
chr1 (219-256)||(45534131-45534168)
[»] scaffold0227 (1 HSPs)
scaffold0227 (218-255)||(15053-15090)
[»] chr2 (4 HSPs)
chr2 (218-255)||(18840953-18840990)
chr2 (217-254)||(20242666-20242703)
chr2 (218-255)||(34784911-34784948)
chr2 (218-255)||(41843528-41843565)
[»] scaffold0652 (1 HSPs)
scaffold0652 (219-255)||(403-439)
[»] chr3 (1 HSPs)
chr3 (218-254)||(21861658-21861694)


Alignment Details
Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 40773403 - 40773197
Alignment:
Q  9 gagatgaagagggaaagaggaaaaacatgaggtatttcaaaatacctctcttttgttact-ctctagtcnnnnnnngttactgctactcttctccctctc 107  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||  |        ||| ||||||| ||||||| ||||    
T  40773403 gagaagaagagggaaagaagaaaaacatgaggtatttcaaaatacctctcttttgttgctgctctttt----ttttgttcctgctacacttctccttctc 40773308  T
Q  108 gttgttaggtttgctt-cttcttctgttaacaatttcatatttttaacggggttgtgggattattgtttcctgtacaatggtattagtaccaaattacct 206  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||| |||||| || || |||| |||||| |||||||| ||||||||||||||||||||     
T  40773307 gttgataggtttgctttcttcttctgtttacaatttcatattttaaacgggtttatgagattcttgtttactgtacaacggtattagtaccaaattaccg 40773208  T
Q  207 ttcctgctagc 217  Q
    |||||||||||    
T  40773207 ttcctgctagc 40773197  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 18212973 - 18213010
Alignment:
Q  218 ctatgaagcacagacactcctcggataaggtgtgtccc 255  Q
    |||||||||||||||||||||||||||||| |||||||    
T  18212973 ctatgaagcacagacactcctcggataaggcgtgtccc 18213010  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 32287404 - 32287440
Alignment:
Q  219 tatgaagcacagacactcctcggataaggtgtgtccc 255  Q
    |||||||||| |||||||||||||| |||||||||||    
T  32287404 tatgaagcacggacactcctcggattaggtgtgtccc 32287440  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 255
Target Start/End: Complemental strand, 49107923 - 49107887
Alignment:
Q  219 tatgaagcacagacactcctcggataaggtgtgtccc 255  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  49107923 tatgaagcacagacactcctcggattaggtatgtccc 49107887  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 38464312 - 38464350
Alignment:
Q  217 cctatgaagcacagacactcctcggataaggtgtgtccc 255  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  38464312 cctatgaagcacagacactcctcggattaggtgtgtccc 38464350  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 253
Target Start/End: Complemental strand, 2548499 - 2548464
Alignment:
Q  218 ctatgaagcacagacactcctcggataaggtgtgtc 253  Q
    |||||||||||||||||||||||||| |||||||||    
T  2548499 ctatgaagcacagacactcctcggattaggtgtgtc 2548464  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 253
Target Start/End: Complemental strand, 14674368 - 14674333
Alignment:
Q  218 ctatgaagcacagacactcctcggataaggtgtgtc 253  Q
    |||||||||||||||||||||||||| |||||||||    
T  14674368 ctatgaagcacagacactcctcggattaggtgtgtc 14674333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 6247730 - 6247692
Alignment:
Q  217 cctatgaagcacagacactcctcggataaggtgtgtccc 255  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  6247730 cctatgaagcacagacacttctcggattaggtgtgtccc 6247692  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 16641909 - 16641946
Alignment:
Q  218 ctatgaagcacagacactcctcggataaggtgtgtccc 255  Q
    |||||||||||||||||||||||||| |||||||||||    
T  16641909 ctatgaagcacagacactcctcggattaggtgtgtccc 16641946  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 253
Target Start/End: Complemental strand, 18964309 - 18964274
Alignment:
Q  218 ctatgaagcacagacactcctcggataaggtgtgtc 253  Q
    |||||||||||||||||||||||||||||| |||||    
T  18964309 ctatgaagcacagacactcctcggataaggcgtgtc 18964274  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 29510232 - 29510270
Alignment:
Q  217 cctatgaagcacagacactcctcggataaggtgtgtccc 255  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  29510232 cctatgaagcacggacactcctcggattaggtgtgtccc 29510270  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 12071651 - 12071684
Alignment:
Q  29 aaaaacatgaggtatttcaaaatacctctctttt 62  Q
    ||||| ||||||||||||||||||||||||||||    
T  12071651 aaaaatatgaggtatttcaaaatacctctctttt 12071684  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 25566949 - 25566912
Alignment:
Q  218 ctatgaagcacagacactcctcggataaggtgtgtccc 255  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  25566949 ctatgaagcacagacactcctcggattaggcgtgtccc 25566912  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 38487156 - 38487193
Alignment:
Q  217 cctatgaagcacagacactcctcggataaggtgtgtcc 254  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  38487156 cctatgaagcacagacactcctcggattatgtgtgtcc 38487193  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 36450694 - 36450730
Alignment:
Q  218 ctatgaagcacagacactcctcggataaggtgtgtcc 254  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  36450694 ctatgaagcacagacactcctcggattaggcgtgtcc 36450730  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 255
Target Start/End: Complemental strand, 12696446 - 12696411
Alignment:
Q  220 atgaagcacagacactcctcggataaggtgtgtccc 255  Q
    ||||||||||||||||||| ||||||||||||||||    
T  12696446 atgaagcacagacactccttggataaggtgtgtccc 12696411  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 34595253 - 34595216
Alignment:
Q  218 ctatgaagcacagacactcctcggataaggtgtgtccc 255  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtccc 34595216  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 4388199 - 4388163
Alignment:
Q  218 ctatgaagcacagacactcctcggataaggtgtgtcc 254  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  4388199 ctatgaagcacagacacttctcggataaggcgtgtcc 4388163  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 253
Target Start/End: Original strand, 8776907 - 8776943
Alignment:
Q  217 cctatgaagcacagacactcctcggataaggtgtgtc 253  Q
    |||||||||||| |||||||||||||| |||||||||    
T  8776907 cctatgaagcacggacactcctcggattaggtgtgtc 8776943  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 17327589 - 17327629
Alignment:
Q  217 cctatgaagcacagacactcctcggataaggtgtgtccctg 257  Q
    |||||||||||| |||||||||||||| ||| |||||||||    
T  17327589 cctatgaagcacggacactcctcggattaggcgtgtccctg 17327629  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 27903963 - 27903999
Alignment:
Q  219 tatgaagcacagacactcctcggataaggtgtgtccc 255  Q
    |||||| |||||||||||||||||| |||||||||||    
T  27903963 tatgaatcacagacactcctcggattaggtgtgtccc 27903999  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 255
Target Start/End: Complemental strand, 31959268 - 31959232
Alignment:
Q  219 tatgaagcacagacactcctcggataaggtgtgtccc 255  Q
    |||||||||| |||||||||||||| |||||||||||    
T  31959268 tatgaagcacggacactcctcggattaggtgtgtccc 31959232  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 257
Target Start/End: Original strand, 5414101 - 5414140
Alignment:
Q  218 ctatgaagcacagacactcctcggataaggtgtgtccctg 257  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  5414101 ctatgaagcacggacactccttggataaggtgtgtccctg 5414140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 40784073 - 40784035
Alignment:
Q  217 cctatgaagcacagacactcctcggataaggtgtgtccc 255  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  40784073 cctatgaagcacggacactcctcggattaggtgtgtccc 40784035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 53381529 - 53381567
Alignment:
Q  217 cctatgaagcacagacactcctcggataaggtgtgtccc 255  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  53381529 cctatgaagcacggacactcctcggattaggtgtgtccc 53381567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 12324038 - 12324005
Alignment:
Q  219 tatgaagcacagacactcctcggataaggtgtgt 252  Q
    |||||||||| |||||||||||||||||||||||    
T  12324038 tatgaagcacggacactcctcggataaggtgtgt 12324005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 17876286 - 17876249
Alignment:
Q  217 cctatgaagcacagacactcctcggataaggtgtgtcc 254  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  17876286 cctatgaagcacagacactccttggattaggtgtgtcc 17876249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 236913 - 236951
Alignment:
Q  217 cctatgaagcacagacactcctcggataaggtgtgtccc 255  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  236913 cctatgaagcacagacactcctcagattaggtgtgtccc 236951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 42325679 - 42325641
Alignment:
Q  217 cctatgaagcacagacactcctcggataaggtgtgtccc 255  Q
    |||||||||||||||||||||||| || |||||||||||    
T  42325679 cctatgaagcacagacactcctcgaattaggtgtgtccc 42325641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 7918153 - 7918190
Alignment:
Q  217 cctatgaagcacagacactcctcggataaggtgtgtcc 254  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  7918153 cctatgaagcacggacactcctcggattaggtgtgtcc 7918190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 45534131 - 45534168
Alignment:
Q  219 tatgaagcacagacactcctcggataaggtgtgtccct 256  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  45534131 tatgaagcacaaacactcctcggataaggcgtgtccct 45534168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 15090 - 15053
Alignment:
Q  218 ctatgaagcacagacactcctcggataaggtgtgtccc 255  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  15090 ctatgaagcacaaacactcctcggataaggcgtgtccc 15053  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 18840953 - 18840990
Alignment:
Q  218 ctatgaagcacagacactcctcggataaggtgtgtccc 255  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  18840953 ctatgaagcacggacactcctcggattaggtgtgtccc 18840990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 20242666 - 20242703
Alignment:
Q  217 cctatgaagcacagacactcctcggataaggtgtgtcc 254  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  20242666 cctatgaagcacagacactcttcggataaggcgtgtcc 20242703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 34784911 - 34784948
Alignment:
Q  218 ctatgaagcacagacactcctcggataaggtgtgtccc 255  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  34784911 ctatgaagcacagacactcctcgaataaggcgtgtccc 34784948  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 41843565 - 41843528
Alignment:
Q  218 ctatgaagcacagacactcctcggataaggtgtgtccc 255  Q
    |||||||||||||||||||||||||||| | |||||||    
T  41843565 ctatgaagcacagacactcctcggataaagcgtgtccc 41843528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 403 - 439
Alignment:
Q  219 tatgaagcacagacactcctcggataaggtgtgtccc 255  Q
    |||||||||| |||||||||||||| |||||||||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtccc 439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 21861694 - 21861658
Alignment:
Q  218 ctatgaagcacagacactcctcggataaggtgtgtcc 254  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  21861694 ctatgaagcacggacactcctcggattaggtgtgtcc 21861658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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