View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2118_low_2 (Length: 558)
Name: NF2118_low_2
Description: NF2118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2118_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Original strand, 12924136 - 12924683
Alignment:
| Q |
1 |
tacattttcaacacctactaacagcattaacagccacatcatccaagtatatgaatgcaattataaaccttccatcaaaagactaatacaaattaagaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12924136 |
tacattttcaacacctactaacagcattaacagccacatcatccaagtatatgaatgcaattataaaccttccatcaaaagactaatacaaattaagaac |
12924235 |
T |
|
| Q |
101 |
aaacaaaatcacctcaagtctaagaatggatattgtatcacttgcacatcaatgaatagaaaatcaacctcagtgaaatggctcatgttggcaccagtct |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12924236 |
aaacaaaatcacctcaagtctaagaacggatattgtatcacttgcacatcaatgaatagaaaatcaacctcagtgaaatggctcatgttggcaccagtct |
12924335 |
T |
|
| Q |
201 |
acaatcatcatcaggagtgaagaaaagaatagctaatagtgcaatgaaccaaatgacaaatagaaacagaaatggtttcttcttccgcgaaaccacttga |
300 |
Q |
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| T |
12924336 |
acaatcatcatcaggagtgaagaaaagaatagctaatagtgcaatgaacaaaatgacaaatagaaacagaaatggtttcttcttccgcgaaaccacttga |
12924435 |
T |
|
| Q |
301 |
ggttgcgactgcatctgaatttcctcctttggcagtgcatcgcgtttgagatcttgcaaaacatactcaattatctcatccctaagcttcttatacagag |
400 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12924436 |
ggttgcgattgcatctgaatttcctcctttggcagtgcatcgcgtctgagatcttgcaaaacatactcaattatctcatccctaagcttcttatacggag |
12924535 |
T |
|
| Q |
401 |
gatcagcattgtccaaagggaggatttcatcaggtttaaaatttttgagaaaattcacagtgatatcatcctccacagaagtgaatttgtcaaattcaca |
500 |
Q |
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| T |
12924536 |
gatcagcattgtccaaagggaggatttcatctggtttaaaatttttgagaaaattcacagtgatatcatcctccacagaagtgaatttgtcaaattcaca |
12924635 |
T |
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| Q |
501 |
cacatcaaagcaattgctggagctattctcccctgtgtcggttttctt |
548 |
Q |
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| T |
12924636 |
cacatcaaagcaattgctggaactattctcccctgtgtcggttttctt |
12924683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 548
Target Start/End: Complemental strand, 30791522 - 30791005
Alignment:
| Q |
1 |
tacattttcaacacctactaacagcattaa-cagccacatcatccaagtatatgaatgcaattataaa-ccttccatcaaaagactaatacaaattaaga |
98 |
Q |
| |
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||||||||||||||||||||||| |||||| |||||||||||||||||| | || | ||||| ||||||||||||||||||||||||||| ||| |
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| T |
30791522 |
tacattttcaacacctactaacaacattaatcagccacatcatccaagt-------tacagtaataaaaccttccatcaaaagactaatacaaattgaga |
30791430 |
T |
|
| Q |
99 |
acaaacaaaatcacctcaagtctaagaatggatattgtatcacttgcacatcaatgaatagaaaatcaacctcagtgaaatggctcatgttggcaccagt |
198 |
Q |
| |
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|||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||| || |||| ||||||||||| ||| |
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| T |
30791429 |
acaaaccaaatcacctgaagtctaagaacagatattgtatcacttgcacatcaatgagtaaaaaa--------------------catgttggcacaagt |
30791350 |
T |
|
| Q |
199 |
ctacaatcatcatcaggagtgaagaaaagaatagctaatagtgcaatgaaccaaatgacaaatagaaacagaaatggtttcttcttccgcgaaaccactt |
298 |
Q |
| |
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||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| | |||||| ||||||||||||||| | ||| ||||| |
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| T |
30791349 |
ctacaatcatcatcaggagtgaagaaaagcata--taatgctgcaatgaaccaaatgacaca--gaaacaaaaatggtttcttcttatccaaaagcactt |
30791254 |
T |
|
| Q |
299 |
gaggttgcgactgcatctgaatttcctcctttggcagtgcatcgcgtttgagatcttgcaaaacatactcaattatctcatccctaagcttcttatacag |
398 |
Q |
| |
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|||||||||| || |||||||| |||||| ||||||||||| | |||||||||||||||||||||| |||| ||||||||||||||||||||||| | | |
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| T |
30791253 |
gaggttgcgatcgcgtctgaattccctcctctggcagtgcattgtgtttgagatcttgcaaaacatattcaactatctcatccctaagcttcttatcc-g |
30791155 |
T |
|
| Q |
399 |
aggatcagcattgtccaaagggaggatttcatcaggtttaaaatttttgagaaaattcacagtgatatcatcctccacagaagtgaatttgtcaaattca |
498 |
Q |
| |
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||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
30791154 |
aggatcagcatagtccaaattgaggatttcatcaggtttaaaatttttgagaaaattaacagtgatatcatcctccacataagtgaatttgtcgaattca |
30791055 |
T |
|
| Q |
499 |
cacacatcaaagcaattgctggagctattctcccctgtgtcggttttctt |
548 |
Q |
| |
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||| ||||||||||||| || || ||||| |||| |||||| |||||||| |
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| T |
30791054 |
cacgcatcaaagcaattactcgaactattttcccatgtgtctgttttctt |
30791005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 96 - 429
Target Start/End: Original strand, 22382395 - 22382716
Alignment:
| Q |
96 |
agaacaaacaaaatcacctcaagtctaagaatggatattgtatcacttgcacatcaatgaatagaaaatcaacctcagtgaaatggctcatgttggcacc |
195 |
Q |
| |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| || |||||||||| |
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| T |
22382395 |
agaacaaaccaaatcacctcaagtctaagaacagatattgtatcacttgcacatcaatgtatagaaac------------------cttatgttggcact |
22382476 |
T |
|
| Q |
196 |
agtctacaatcatcatcaggagtgaagaaaagaatagctaatagtgcaatgaaccaaatgacaaatagaaacagaaatggtttcttcttccgcgaaacca |
295 |
Q |
| |
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|| | |||||||||||| | |||| ||||||| |||||||||| |||||||||| |||| || | ||||||| ||||| ||| ||||||| | ||| || |
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| T |
22382477 |
aggcgacaatcatcatcggaagtgtagaaaagcatagctaatactgcaatgaacaaaattgcacagagaaacaaaaatgcttttttcttccccaaaagca |
22382576 |
T |
|
| Q |
296 |
c------ttgaggttgcgactgcatctgaatttcctcctttggcagtgcatcgcgtttgagatcttgcaaaacatactcaattatctcatccctaagctt |
389 |
Q |
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| ||||||||| | || |||||||| ||||||||||||| |||| |||||||||||| ||||||| | ||||| ||||||||||||||||| |
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| T |
22382577 |
caagcacttgaggttgtaatcgcgtctgaattccctcctttggcagagcattgcgtttgagatcgtgcaaaatgtcctcaaccatctcatccctaagctt |
22382676 |
T |
|
| Q |
390 |
cttatacagaggatcagcattgtccaaagggaggatttca |
429 |
Q |
| |
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||||||| ||||||||||||||||||||| ||||||||| |
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| T |
22382677 |
cttataccgaggatcagcattgtccaaagtcaggatttca |
22382716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 468 - 548
Target Start/End: Original strand, 22382725 - 22382805
Alignment:
| Q |
468 |
atcctccacagaagtgaatttgtcaaattcacacacatcaaagcaattgctggagctattctcccctgtgtcggttttctt |
548 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| | || ||| ||||||||||| |
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| T |
22382725 |
atcctccacataagtgaatttgtcaaattcacacacatcaaagcaattactggaactatttttccttgtctcggttttctt |
22382805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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