View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2118_low_5 (Length: 431)
Name: NF2118_low_5
Description: NF2118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2118_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 416
Target Start/End: Complemental strand, 52036167 - 52035765
Alignment:
| Q |
10 |
gaacctgtgtatagtgaatttgtgcaacaccaatagagattcttattaaatggaataaatgcaattgctcgttgttgtgaacttaattagcattcgcaat |
109 |
Q |
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| T |
52036167 |
gaacctgtgtatagtgaatttgtgcaacaccaatagagattcttattaaatggaataaatgcaattggtcgttgttgtgaacttaattagcattcgcaat |
52036068 |
T |
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| Q |
110 |
tattgtttacttgctgtatagaatctcaaacagactaacaacagtagttgccttgcctaatgttgaggcatcccctgttcccacagaaaacggttaaata |
209 |
Q |
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| T |
52036067 |
tattgtttacttgttgtatagaatctcaaacagactaacaacagtagttgccttgccttatgttgaggcatcccctgttcccacagaaaacggtta---a |
52035971 |
T |
|
| Q |
210 |
atggttaatgtaatctattgagtggtttatcaattccatcctcttacatttttcattcattcttttcatcaattatccaaacaacttgcaagaacaccta |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52035970 |
atggttaatgtaatctattgagtggtttatcaattccatcctcttacatttttcattcattcttttcatcaattatccaaacaacttgcaagaacacgta |
52035871 |
T |
|
| Q |
310 |
tnnnnnnntgtcaattacttcgaattattttgttgacaaatactaatattgtagaagcttcacagataataagttctctcccgacaatgtatatcatagc |
409 |
Q |
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| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52035870 |
t-aaaaaatatcaattacttcgaattattttgtttacaaatactaatattgtagaagcttcacagataataagttctctcccgacaatgtatatcatcgc |
52035772 |
T |
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| Q |
410 |
tcatacg |
416 |
Q |
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| T |
52035771 |
tcatacg |
52035765 |
T |
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