View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21190_low_1 (Length: 574)
Name: NF21190_low_1
Description: NF21190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21190_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 13 - 454
Target Start/End: Complemental strand, 31176720 - 31176279
Alignment:
| Q |
13 |
gagattaaagggtatgagaaagttccttctaatagtgaaaatgatcttctaaaagctgtggcaaatcaacctgtatcagtttatgttgatgcaggagatt |
112 |
Q |
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| T |
31176720 |
gagattaaagggtatgagaaagttccttctaatagtgaaaatgatcttctaaaagctgtggcaaatcaacctgtatcagtttatgttgatgcaggagatt |
31176621 |
T |
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| Q |
113 |
atggatctcagttttactcgggtggaatttttacaggaaaatgtggaactgatacagatcatgttgttactattgttggttatggtgtatcacatgatta |
212 |
Q |
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| T |
31176620 |
atgtatttcagttttactcaggtggaatttttacaggaaaatgtggaactgatacagatcatgttgttactattgttggttatggtgtatcacttgatta |
31176521 |
T |
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| Q |
213 |
tactgagtattggttagtaaaaaattcatggggtactgggtggggtgagaaagggtacatgaaattgaagcgaaacgttgattctaaaaaaggtttatgt |
312 |
Q |
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| T |
31176520 |
tactgagtattggttagtaaaaaattcatggggtactgggtggggtgagaaagggtacatgaaattgaagcgaaacgttgattctaaaaaaggtttatgt |
31176421 |
T |
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| Q |
313 |
ggaattgccaccaatccttcttatccagttgcttaatgctatttatctgctaccacatatatccaactaaaaaatatatgctactactattttggagtgt |
412 |
Q |
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| T |
31176420 |
ggaattgccaccaatccttcttatccagttgcttaatgctatttatctgctaccacatatatccaactaaaaaatatatgctactactattttggagtgt |
31176321 |
T |
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| Q |
413 |
gcacgtgcgtatgtaggttgtgttcctaaagtgggtgcataa |
454 |
Q |
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| T |
31176320 |
gcacgtgtgtatgtaggttgtggtcctaaagtgggtgcataa |
31176279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 467 - 554
Target Start/End: Complemental strand, 31176294 - 31176207
Alignment:
| Q |
467 |
taaagtgagtgcataagaacttatatatagttttgggtgtttgtgaagaagaatcgataggtttgtaaacttcatgttctcaaccata |
554 |
Q |
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| T |
31176294 |
taaagtgggtgcataagaacttatatatagttttgggtgtttgtgaagaagaatcgataggtttgtaaacttcatgttctcaaccata |
31176207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 31194253 - 31194178
Alignment:
| Q |
123 |
gttttactcgggtggaatttttacaggaaaatgtggaactgatacagatcatgttgttactattgttggttatggt |
198 |
Q |
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| T |
31194253 |
gttttactcaagtggaatttatacaggagaatgtggaactgagctagaccatggtgttactgctgttggttatggt |
31194178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 31194165 - 31194107
Alignment:
| Q |
214 |
actgagtattggttagtaaaaaattcatggggtactgggtggggtgagaaagggtacat |
272 |
Q |
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| T |
31194165 |
actgattattggattgtgaagaattcatggggcactgtgtggggtgagaaagggtacat |
31194107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 198
Target Start/End: Complemental strand, 35228270 - 35228196
Alignment:
| Q |
124 |
ttttactcgggtggaatttttacaggaaaatgtggaactgatacagatcatgttgttactattgttggttatggt |
198 |
Q |
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| T |
35228270 |
ttttactcaagtggaattttgaaaggaaaatgtggaattgatttagatcatacagttactatagttggttatggt |
35228196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 35228176 - 35228128
Alignment:
| Q |
218 |
agtattggttagtaaaaaattcatggggtactgggtggggtgagaaagg |
266 |
Q |
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| T |
35228176 |
agtattggctagtgaaaaattcatggggtactaaatggggtgagaaagg |
35228128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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