View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21190_low_2 (Length: 378)
Name: NF21190_low_2
Description: NF21190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21190_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 356880 - 357245
Alignment:
| Q |
1 |
tcacacaagctaatcctgcggattcagagggcatcaacacccgttccaaagagggtatttccaaaccaaaagttttggaacattagttatctagggaatg |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
356880 |
tcacacaagctaatcatgcggattcagagggcatcaacacccgttccaaagagggtatttccaaaccaaaagttttggaacattagttatctagggaatg |
356979 |
T |
|
| Q |
101 |
tcttccttcgcttctgtgtaaaagggtttcagaagaagnnnnnnnnnnnn----gaataggctgcaacaatctaaaggtacaaacacaactcattctaaa |
196 |
Q |
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| T |
356980 |
tcttccttcgctcctgtgtaaaagggtttcagaagaaaaaaaagaaaaaaaaaagaataggttgcaacaatctaaaggtacaaacacaactcattctaaa |
357079 |
T |
|
| Q |
197 |
aaaggaggttcaccaagtaatttgtgagcttgttcattgttcttaacatatacaaaacatacattactggatttattcataacatacattaatacaaatc |
296 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
357080 |
aaaggaggttcataaagtaatttgtgagcttgttcattgttcttaacatatacaaaacatacattactggatttattcataacatacattaatacaaatc |
357179 |
T |
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| Q |
297 |
ataatttataacagataaatagtagacattaatataaaacatatattaatttagatgtcattacat |
362 |
Q |
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| T |
357180 |
ataatttataacagataaatagtagacattaatataaaacatatattaatttagatgtcattacat |
357245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 10582906 - 10583082
Alignment:
| Q |
1 |
tcacacaagctaatcctgcggattcagagggcatcaacacccgttccaaagagggtatttccaaaccaaaagttttggaacattagttatctagggaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
10582906 |
tcacacaagctaatcctgcggattcagagggcatcatcacccgttccaaaatgggtatttccaaaccaaaagttttggaaccttagttgtctagggaatg |
10583005 |
T |
|
| Q |
101 |
tcttccttcgcttctgtgtaaaagggtttcagaagaagnnnnnnnnnnnngaataggctgcaacaatctaaaggtacaaacacaa |
185 |
Q |
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|||||||||||| ||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||| |
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| T |
10583006 |
tcttccttcgctcctgtgtaaaagggtttcagcagaa--------aaaaagaataggctgcagcaatctaaaggtacaaacacaa |
10583082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 38984479 - 38984609
Alignment:
| Q |
1 |
tcacacaagctaatcctgcggattcagagggcatcaacacccgttccaaagagggtatttccaaaccaaaagttttggaacattagttatctagggaatg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| || | |||||| || |||||||| |
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| T |
38984479 |
tcacacaagctaatcctgcggattcagagggcatcatcacccgttccaaaaagggtatttcaaaaccaaaagttttagacccttagttgtc-agggaatg |
38984577 |
T |
|
| Q |
101 |
tcttccttcgcttctgtgtaaaagggtttcag |
132 |
Q |
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||||| || ||| ||||||||||||| ||||| |
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| T |
38984578 |
tcttcttttgctcctgtgtaaaagggcttcag |
38984609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 10583125 - 10583159
Alignment:
| Q |
206 |
tcaccaagtaatttgtgagcttgttcattgttctt |
240 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
10583125 |
tcaccaagtaatttgtgagcttgttcattgttctt |
10583159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 362
Target Start/End: Original strand, 362535 - 362575
Alignment:
| Q |
322 |
acattaatataaaacatatattaatttagatgtcattacat |
362 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||| |
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| T |
362535 |
acattaatataaaacatacattattttagatgtcattacat |
362575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 50249261 - 50249159
Alignment:
| Q |
3 |
acacaagctaatcctgcggattcagagggcatcaacacccgttccaaagagggtatttccaaaccaaaagttttggaacattagttatctagggaatgtc |
102 |
Q |
| |
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||||||| ||||| |||||||||| ||||||||| ||||||||||||| |||||||||| |||||||||||||| |||| |||||| ||||||||||||| |
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| T |
50249261 |
acacaagttaatcatgcggattcaaagggcatcatcacccgttccaaaaagggtatttcaaaaccaaaagttttagaaccttagttgtctagggaatgtc |
50249162 |
T |
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| Q |
103 |
ttc |
105 |
Q |
| |
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||| |
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| T |
50249161 |
ttc |
50249159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 16465511 - 16465598
Alignment:
| Q |
1 |
tcacacaagctaatcctgcggattcagagggcatcaacacccgttccaaagagggtatttccaaaccaaaagttttggaacattagtt |
88 |
Q |
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|||||||||| |||| ||||||||||||||||||| ||| ||||||||| |||||||||| |||||||||||||| |||| |||||| |
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| T |
16465511 |
tcacacaagcgaatcaggcggattcagagggcatcatcactcgttccaaaaagggtatttcaaaaccaaaagttttagaaccttagtt |
16465598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 1265464 - 1265402
Alignment:
| Q |
19 |
cggattcagagggcatcaacacccgttccaaagagggtatttccaaaccaaaagttttggaac |
81 |
Q |
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|||||||||||||||||| ||||||||| ||| | || ||| | |||||||||||||| |||| |
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| T |
1265464 |
cggattcagagggcatcatcacccgttctaaaaacggcattacaaaaccaaaagttttagaac |
1265402 |
T |
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