View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21190_low_3 (Length: 317)
Name: NF21190_low_3
Description: NF21190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21190_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 168 - 300
Target Start/End: Original strand, 41760725 - 41760858
Alignment:
| Q |
168 |
ttgtgtgctaagtactgaagagttaaacaaaaaatttgaagatttcattagaaagatgaaagaagatcttagaattgatgctagacggcatttaatcatg |
267 |
Q |
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| T |
41760725 |
ttgtgtgctaagtacagaagagttaaacaaaaaatttgaagatttcattagaaagatgaaagaagatcttagaattgatgctagacggcatttaatcatg |
41760824 |
T |
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| Q |
268 |
gtttgatttaagcaacaaaa-ccatgatcttctt |
300 |
Q |
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| T |
41760825 |
gtttgatttaagcaacaaaacccatgatcttctt |
41760858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 41760555 - 41760655
Alignment:
| Q |
1 |
aatataattttcatagacgaagaacaaggagaagaagttgaactatttgatgcacatgatgacgagggagataaattgtcggaaattgattacattctaa |
100 |
Q |
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| T |
41760555 |
aatataattttcatagacgaagaacaaggagaagaagttgaactatttgatgcacatgatgatgagggagataaattgtcggaaattgattacattctaa |
41760654 |
T |
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| Q |
101 |
t |
101 |
Q |
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| T |
41760655 |
t |
41760655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 170 - 279
Target Start/End: Original strand, 41795516 - 41795625
Alignment:
| Q |
170 |
gtgtgctaagtactgaagagttaaacaaaaaatttgaagatttcattagaaagatgaaagaagatcttagaattgatgctagacggcatttaatcatggt |
269 |
Q |
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| T |
41795516 |
gtgtgttaagtacagaagagttaaacaaaaaattcgaagatttcattagaaagatgaaagaagatctaagaattgatgctagacggcatttagtcatggt |
41795615 |
T |
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| Q |
270 |
ttgatttaag |
279 |
Q |
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| T |
41795616 |
ttgatttaag |
41795625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 41795385 - 41795456
Alignment:
| Q |
30 |
agaagaagttgaactatttgatgcacatgatgacgagggagataaattgtcggaaattgattacattctaat |
101 |
Q |
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| T |
41795385 |
agaagaagttgaactatttgatgcagatgatgaagacggagataaagggtcggaaattgattacattctaat |
41795456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 23507400 - 23507455
Alignment:
| Q |
172 |
gtgctaagtactgaagagttaaacaaaaaatttgaagatttcattagaaagatgaa |
227 |
Q |
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| T |
23507400 |
gtgctaagcactgaggagttgaacaaaaaatttgatgacttcattaaaaagatgaa |
23507455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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