View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21191_high_7 (Length: 321)
Name: NF21191_high_7
Description: NF21191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21191_high_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 48842970 - 48842666
Alignment:
| Q |
19 |
aattaactgtcatttaagtgagtatattgttaaaattatatgcttgtgacaggtaccttgttagtatccatgatttatgaaacaatcatattgggatcta |
118 |
Q |
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| T |
48842970 |
aattaactgtcatttaagt----atattgttaaaattatatgcttgtgacaggtaccttgttagtatccatgatctatgaaacaatcatattgggatcta |
48842875 |
T |
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| Q |
119 |
ccaactaagaacataaacaattacagatgaatcttttaaacatgatgcata------tataaacaggatattttttcacaattcacaagccaatatccat |
212 |
Q |
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| T |
48842874 |
ccaactcagaacataaacaattacagatgaatcttttaaacatgatgcatactcctatataaacaggatattttttcacaattcacaagccaatatccat |
48842775 |
T |
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| Q |
213 |
gcaataccaaccggtccagcaataccaactcaaaacacacttgtaacagccacacgtctctaatcgatcacaaatttatcatatgcttcctacaaggaca |
312 |
Q |
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| T |
48842774 |
gcaataccaaccggtccaacaataccaactcaaaacacacttgtaacagccacacgtctctaatcgatcacaaatttatcatatgcttcctacaaggaca |
48842675 |
T |
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| Q |
313 |
tatataatt |
321 |
Q |
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| T |
48842674 |
tatataatt |
48842666 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 299
Target Start/End: Complemental strand, 43543771 - 43543690
Alignment:
| Q |
218 |
accaaccggtccagcaataccaactcaaaacacacttgtaacagccacacgtctctaatcgatcacaaatttatcatatgct |
299 |
Q |
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| T |
43543771 |
accaacaggaccaacaaaaccaactccaaacatactagtaacagcaacacgtctccaatcgatgacaaatttatcatctgct |
43543690 |
T |
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