View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21191_low_1 (Length: 796)
Name: NF21191_low_1
Description: NF21191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21191_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 726; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 726; E-Value: 0
Query Start/End: Original strand, 18 - 791
Target Start/End: Complemental strand, 33897299 - 33896526
Alignment:
| Q |
18 |
gattcaacctccaccatcaacgatgaaatagccattgatatacccccaatcttgagagtatacaaaagcggtcgtgttgagaatttaataggtgaagaat |
117 |
Q |
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| T |
33897299 |
gattcaacctccaccatcaacgatgaaatagccattgatatacccccaatcttgagagtatacaaaagcggtcgtgttgaaaatttaataggtgaagaat |
33897200 |
T |
|
| Q |
118 |
ttcttcctccatcccttgatcaagcaaccaacgttgaatcaaaagacgttgtaatctccgaagaacataacatctcagctagacttttcattcccaaaac |
217 |
Q |
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| T |
33897199 |
ttcttcctccatcccttgatcaagcaaccaacgttgaatcaaaagacgttgtaatctccgaagaacataacatctcagctagacttttcattcccaaaac |
33897100 |
T |
|
| Q |
218 |
caatcacccaccaacccaaaaactccctgtctttgtctacttccatggtggtggtttctgcattgaaacacctttctcaccattctaccttaactacctt |
317 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| |
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| T |
33897099 |
caatcacccaccaatccaaaaactccctgtctttgtctacttccatggtggtggtttctgcattgaaacacctttctcaccatgctaccataactatctt |
33897000 |
T |
|
| Q |
318 |
cactctgttacttcacttgctaacgttattggtgtctctgttaattacagaagggcaccggaataccctgttcccactgctcatgaggattcatggctag |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33896999 |
aactctgttacttcacttgctaacgttattggtgtctctgttcattacagaagagcaccggaataccctgttcccattgctcatgaggattcatggctag |
33896900 |
T |
|
| Q |
418 |
cactcaaatgggttgcttcacatgttggtggaaatggttgtgatgaatggttgaatcaatatgcagattttgagaaagtgttcttaggaggtgatagtgc |
517 |
Q |
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| T |
33896899 |
cactcaaatgggttgcttcacatgttggtggaaatggttctgatgaatggttgaatcaatatgcagattttgagaaagtgttcttaggaggtgatagtgc |
33896800 |
T |
|
| Q |
518 |
tggtgctaatatttcacactatttgggtattcgggttgggaaggaaaatttagatggtgtgaaacttgaagggagtgtttatatacatccttatttttgg |
617 |
Q |
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| T |
33896799 |
tggtgctaatatttcacactatttgggtattcgggttgggaaggaaaatttagatggtgtgaaacttgaagggagtgtttatatacatccttatttttgg |
33896700 |
T |
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| Q |
618 |
ggtgtggatctaattggttctgaatcaaatatggctgaatttgtagaaaagattcataatttgtggcgtttttcatgtccaactacgactggatcggatg |
717 |
Q |
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| T |
33896699 |
ggtgtggatctaattggttctgaatcaaatatggctgaatttgtagaaaagattcataatttgtggcgtttttcatgtccaactacgactggatcggatg |
33896600 |
T |
|
| Q |
718 |
acccgttgattaacccagctaatgatccggatttggggaagttgggttgtaagagattgcttgtctgtgctgct |
791 |
Q |
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| T |
33896599 |
acccgttgattaacccagctaatgatccggatttggggaagttgggttgtaagagattgcttgtttgtgttgct |
33896526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 27 - 779
Target Start/End: Original strand, 33901561 - 33902313
Alignment:
| Q |
27 |
tccaccatcaacgatgaaatagccattgatatacccccaatcttgagagtatacaaaagcggtcgtgttgagaatttaataggtgaagaatttcttcctc |
126 |
Q |
| |
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||||||||| |||||||| ||||| ||||| || ||||| | | | | |||||||||| ||||||||| ||| | |||| |||| ||||||||| |
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| T |
33901561 |
tccaccatcgacgatgaagtagccgttgatctaaccccagttcttaaactatacaaaagtggtcgtgttcagagacttgcaggtacagaagttcttcctc |
33901660 |
T |
|
| Q |
127 |
catcccttgatcaagcaaccaacgttgaatcaaaagacgttgtaatctccgaagaacataacatctcagctagacttttcattcccaaaaccaatcaccc |
226 |
Q |
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|||| ||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
33901661 |
catctcttgatcccaaaaccaacgttgaatcaaaagatgttgttatctccgaagaacataacatctcagctagacttttcattccaaaaaccaattaccc |
33901760 |
T |
|
| Q |
227 |
accaacccaaaaactccctgtctttgtctacttccatggtggtggtttctgcattgaaacacctttctcaccattctaccttaactaccttcactctgtt |
326 |
Q |
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||||||||||||||||||| | |||| ||| |||||||||||| ||||||||||||||| ||||| |||||| ||||| ||||||||| |||||||| |
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| T |
33901761 |
accaacccaaaaactccctcttcttgtttacatccatggtggtgctttctgcattgaaactcctttttcaccaaactaccataactacctcaactctgtt |
33901860 |
T |
|
| Q |
327 |
acttcacttgctaacgttattggtgtctctgttaattacagaagggcaccggaataccctgttcccactgctcatgaggattcatggctagcactcaaat |
426 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| ||||||||| | ||||||||||| | |||||| ||||||||||| |||||||||| |
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| T |
33901861 |
acttcacttgctaacgttattggtgtctctgttcattacagaagagcaccggaacatcctgttcccacgggtcatgaagattcatggcttgcactcaaat |
33901960 |
T |
|
| Q |
427 |
gggttgcttcacatgttggtggaaatggttgtgatgaatggttgaatcaatatgcagattttgagaaagtgttcttaggaggtgatagtgctggtgctaa |
526 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
33901961 |
gggttgcttcacatgttggtggaaatggttctgatgaatggttgaatcaatatgcagattttgagaaagttttcttaggaggtgatagtgctggggctaa |
33902060 |
T |
|
| Q |
527 |
tatttcacactatttgggtattcgggttgggaaggaaaatttagatggtgtgaaacttgaagggagtgtttatatacatccttatttttggggtgtggat |
626 |
Q |
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|||| ||||| |||| |||||||||| |||||||||||||| |||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
33902061 |
tattgcacaccatttaagtattcgggtcgggaaggaaaatttggatggtgtaaaacttgaagggagtttttatattcatccttatttttggggtgtggat |
33902160 |
T |
|
| Q |
627 |
ctaattggttctgaa-tcaaatatggctgaatttgtagaaaagattcataatttgtggcgtttttcatgtccaactacgactggatcggatgacccgttg |
725 |
Q |
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| T |
33902161 |
cggattggatcagaactgaaaca-agctgaatatattgaaaagattcataatttatggcgttttgcatgtccaactacgaatggatcggatgacccgttg |
33902259 |
T |
|
| Q |
726 |
attaacccagctaatgatccggatttggggaagttgggttgtaagagattgctt |
779 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33902260 |
attaacccggctaatgatccggatttggggaagttgggttgtaagagattgctt |
33902313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 33918568 - 33918497
Alignment:
| Q |
228 |
ccaacccaaaaactccctgtctttgtctacttccatggtggtggtttctgcattgaaacacctttctcacca |
299 |
Q |
| |
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|||| ||||||||||||| || |||| |||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
33918568 |
ccaaaccaaaaactccctctccttgtttacttccatggtggtggtttctgcgtagaaacacctttctcacca |
33918497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 19643045 - 19642974
Alignment:
| Q |
228 |
ccaacccaaaaactccctgtctttgtctacttccatggtggtggtttctgcattgaaacacctttctcacca |
299 |
Q |
| |
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|||| ||||||||||||| || |||| |||||||| ||||||||||||||| | |||||||||||||||||| |
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| T |
19643045 |
ccaaaccaaaaactccctctccttgtttacttccacggtggtggtttctgcgtagaaacacctttctcacca |
19642974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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