View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21191_low_13 (Length: 253)
Name: NF21191_low_13
Description: NF21191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21191_low_13 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 25998074 - 25997836
Alignment:
| Q |
16 |
agactcaacctccattgatagcatacttgcttctctaattttaccttttagggaatgaaagaaaattaagaaatgcatgattataaaatgcacaagttca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25998074 |
agactcaacctccattgatagcatacttgcttctctaattttaccttttagggaatgaaagaaaattaagaaatgcatgattataaaatgcacaagttcg |
25997975 |
T |
|
| Q |
116 |
atttttctccgttattgtcc-atcaagtgcctagaagtccaacccaaaagattaacccaaatggagagtcgcgcgttctaataagaacgtagcatatgga |
214 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25997974 |
atttttctccgttattgtcccatcaagtgcctagaagtccaacccaaaagattaacccaaaaggagagtcgcgcgttctaataagaacgtagcatatgga |
25997875 |
T |
|
| Q |
215 |
tcgcaatcaatgagttgattgtagcatgcaatccacgcc |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25997874 |
tcgcaatcaatgagttgattgtagcatgcaatccacgcc |
25997836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University