View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21191_low_15 (Length: 242)
Name: NF21191_low_15
Description: NF21191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21191_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 7500778 - 7500553
Alignment:
| Q |
1 |
cctatatccttccacgcctcgatggggcagccttaatggcattgtcctgtgtatgttctgaccttcgccacttgatctgcaacaacgaggaattatggcg |
100 |
Q |
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| T |
7500778 |
cctatatccttccacgcctcgatggggcagccttaatggcattgtcctgtgtatgttccgaccttcgccacttgatctgcaacaacgaggaattatggcg |
7500679 |
T |
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| Q |
101 |
gaacatttgcacctccatgtggccttgccttctgcatccaaccgttagccacattatcaccactttccctggtggttaccgttccttcttctccgacgcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7500678 |
gaacatttgcacctccatgtggccttgccttctgcatccaaccgttagccacattatcaccactttccctggtggttaccgttccttcttctccgacgcg |
7500579 |
T |
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| Q |
201 |
tttccttccattcaccattataatca |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
7500578 |
tttccttccattcaccattataatca |
7500553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 218
Target Start/End: Complemental strand, 7502118 - 7501994
Alignment:
| Q |
94 |
tatggcggaacatttgcacctccatgtggccttgccttctgcatccaaccgttagccacattatcaccactttccctggtggttaccgttccttcttctc |
193 |
Q |
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| T |
7502118 |
tatggcggaatatttgcacctcaaagtggccttcccttatggatccaatcgttaacgatgtcatctccactttccccggtggttacagttcattcttctc |
7502019 |
T |
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| Q |
194 |
cgacgcgtttccttccattcaccat |
218 |
Q |
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| T |
7502018 |
cgatgcgttcccttcccttcaccat |
7501994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 8057420 - 8057475
Alignment:
| Q |
172 |
gtggttaccgttccttcttctccgacgcgtttccttccattcaccattataatcat |
227 |
Q |
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| T |
8057420 |
gtggttatcgttctttcttctccgacgcgttccctgccattcaccatcgtaatcat |
8057475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 27240919 - 27240977
Alignment:
| Q |
160 |
ccactttccctggtggttaccgttccttcttctccgacgcgtttccttccattcaccat |
218 |
Q |
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| T |
27240919 |
ccactttccctggtggttaccgttcctttttctccgacgcattcccttccctgcaccat |
27240977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 27257523 - 27257576
Alignment:
| Q |
162 |
actttccctggtggttaccgttccttcttctccgacgcgtttccttccattcac |
215 |
Q |
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| T |
27257523 |
actttccctggaggttaccgttccttcttctcggacgccttcccttcccttcac |
27257576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 27253110 - 27253177
Alignment:
| Q |
45 |
tcctgtgtatgttctgaccttcgccacttgatctgcaacaacgaggaattatggcggaacatttgcac |
112 |
Q |
| |
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|||||||||| ||| || || |||||| |||||||||||||||| || ||||||||||||| ||||| |
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| T |
27253110 |
tcctgtgtatcttcagaactccgccacatgatctgcaacaacgaagatctatggcggaacatatgcac |
27253177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 27246448 - 27246482
Alignment:
| Q |
160 |
ccactttccctggtggttaccgttccttcttctcc |
194 |
Q |
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| T |
27246448 |
ccactttccctggtggttaccattccttcttctcc |
27246482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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