View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21191_low_3 (Length: 647)

Name: NF21191_low_3
Description: NF21191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21191_low_3
NF21191_low_3
[»] chr7 (8 HSPs)
chr7 (15-600)||(47905966-47906568)
chr7 (15-335)||(47908738-47909058)
chr7 (35-141)||(47911153-47911259)
chr7 (198-357)||(47899483-47899642)
chr7 (597-629)||(47906648-47906680)
chr7 (40-87)||(47916063-47916110)
chr7 (36-141)||(47899309-47899414)
chr7 (196-256)||(47911326-47911386)
[»] chr5 (1 HSPs)
chr5 (108-249)||(39403205-39403346)
[»] chr3 (4 HSPs)
chr3 (36-127)||(41706173-41706264)
chr3 (67-126)||(35351697-35351756)
chr3 (35-123)||(35374793-35374881)
chr3 (36-118)||(35356839-35356921)
[»] chr1 (3 HSPs)
chr1 (310-357)||(31209392-31209439)
chr1 (198-259)||(31209493-31209554)
chr1 (36-111)||(31209653-31209728)


Alignment Details
Target: chr7 (Bit Score: 519; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 15 - 600
Target Start/End: Original strand, 47905966 - 47906568
Alignment:
Q  15 cagagatgacagcaaataagggagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47905966 cagagatgacagcaaataagggagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagag 47906065  T
Q  115 ggagggtacgaacatgatcattatctttgaattcagtcaagcaaacggaacaagtttcttgttcagacttaatagtagtattgtagatgaaagacggaat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47906066 ggagggtacgaacatgatcattatctttgaattcagtcaagcaaacggaacaagtttcttgttcagacttagtagtagtattgtagatgaaagacggaat 47906165  T
Q  215 aagatttataacaaactcatgtaagccctgtggagcctcctcctccaccaccatcattgtgtcaacgtcatatcgaaggttctccctttcgctcaaggag 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47906166 aagatttataacaaactcatgtaagccctgtggagcctcctcctcctccaccatcattgtgtcgacgtcatatcgaaggttctccctttcgctcaaggag 47906265  T
Q  315 gaggaggagttagagaggaaccggcggtaagtgtggactatgaagcaagttataaggagggaacaggttgttgtggcaaatgccaacaaggtgacagata 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47906266 gaggaggagttagagaggaaccggcggtaagtgtggactatgaagcaagttataaggagggaacaggttgttgtggcaaatgccaacaaggtgacagata 47906365  T
Q  415 acagagcctctaagatctcattctccatggtaataggtttagggttaatgtctttgtgtattattgtgagaagatctg-----------------tggtt 497  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||                 |||||    
T  47906366 acagagcctctaagatatcattctccatggtaataggtttagggttaatgtctgtgtgtgttattgtgagaagatatgagcgaggaaactgtggttggtt 47906465  T
Q  498 tatgaacacgagattgtgggctttagaatctctgtattcaataaataaataaatgcatagcaaagtaaatggaatttaagagctgtccaaaatgagatac 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47906466 tatgaacacgagattgtgggctttagaatctctgtattcaataaataaataaatgcatagcaaagtaaatggaatttaagagctgtccaaaatgagatac 47906565  T
Q  598 aaa 600  Q
    |||    
T  47906566 aaa 47906568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 15 - 335
Target Start/End: Original strand, 47908738 - 47909058
Alignment:
Q  15 cagagatgacagcaaataagggagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47908738 cagagatgacagcaaataagggagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagag 47908837  T
Q  115 ggagggtacgaacatgatcattatctttgaattcagtcaagcaaacggaacaagtttcttgttcagacttaatagtagtattgtagatgaaagacggaat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  47908838 ggagggtacgaacatgatcattatctttgaattcagtcaagcaaacggaacaagtttcttgttcagacttagtagtagtattgtagatgaaagacagaat 47908937  T
Q  215 aagatttataacaaactcatgtaagccctgtggagcctcctcctccaccaccatcattgtgtcaacgtcatatcgaaggttctccctttcgctcaaggag 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  47908938 aagatttataacaaactcatgtaagccctgtggagcctcctcctcctccaccattattgtgtcgacgtcatatcgaaggttctccctttcgctcaaggag 47909037  T
Q  315 gaggaggagttagagaggaac 335  Q
    |||||||||||||||||||||    
T  47909038 gaggaggagttagagaggaac 47909058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 35 - 141
Target Start/End: Original strand, 47911153 - 47911259
Alignment:
Q  35 ggagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggagggtacgaacatgatca 134  Q
    ||||||||||| ||||||| ||| ||||||||| |||||||| |||||||||| | |||| ||| |||| ||||||| |||||||||||| |  |||| |    
T  47911153 ggagcgacatacaggacagctagcgtttgaacggagccaaacgtcaatgcaattgagatggaaagtgtgagagcaaatagggagggtacggatgtgatta 47911252  T
Q  135 ttatctt 141  Q
    |||||||    
T  47911253 ttatctt 47911259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 198 - 357
Target Start/End: Original strand, 47899483 - 47899642
Alignment:
Q  198 tagatgaaagacggaataagatttataacaaactcatgtaagccctgtggagcctcctcctccaccaccatcattgtgtcaacgtcatatcgaaggttct 297  Q
    |||||||| |||||||||  || ||||||| |||||| |||||| |||||||||||||||||| ||    |  |||  || |||||||||  ||||   |    
T  47899483 tagatgaaggacggaatagcatatataacagactcatctaagccatgtggagcctcctcctcctccgttgttgttgactcgacgtcatattcaagggatt 47899582  T
Q  298 ccctttcgctcaaggaggaggaggagttagagaggaaccggcggtaagtgtggactatga 357  Q
    ||   |||||||| |||||||||||||||| | ||||||||||| |||||||||||||||    
T  47899583 ccaagtcgctcaacgaggaggaggagttagggtggaaccggcggcaagtgtggactatga 47899642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 597 - 629
Target Start/End: Original strand, 47906648 - 47906680
Alignment:
Q  597 caaagccagtatggaattgctacacggttttac 629  Q
    |||||||||||||||||||||||||||||||||    
T  47906648 caaagccagtatggaattgctacacggttttac 47906680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 47916063 - 47916110
Alignment:
Q  40 gacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaat 87  Q
    |||||| ||||||||||| |||| |||||||||||||| |||||||||    
T  47916063 gacatataggacagttagggtttaaacgaagccaaacaacaatgcaat 47916110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 141
Target Start/End: Original strand, 47899309 - 47899414
Alignment:
Q  36 gagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggagggtacgaacatgatcat 135  Q
    |||||||| | ||||||  ||| |||||||||||||||||| || || |||| | |||| ||| ||||||||||||  || ||| | ||||  |||||||    
T  47899309 gagcgacacaaaggacaactagggtttgaacgaagccaaacgtcgatacaattgagatggaaagtgtgggagcaaaacggaaggatgcgaatgtgatcat 47899408  T
Q  136 tatctt 141  Q
    ||||||    
T  47899409 tatctt 47899414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 47911326 - 47911386
Alignment:
Q  196 tgtagatgaaagacggaataagatttataacaaactcatgtaagccctgtggagcctcctc 256  Q
    ||||||||||||||||||||   ||||||||| |||| | ||||||||||| | |||||||    
T  47911326 tgtagatgaaagacggaatagcttttataacagactcgtctaagccctgtgcaacctcctc 47911386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 108 - 249
Target Start/End: Original strand, 39403205 - 39403346
Alignment:
Q  108 caaagagggagggtacgaacatgatcattatctttgaattcagtcaagcaaacggaacaagtttcttgttcagacttaatagtagtattgtagatgaaag 207  Q
    |||||||| | |||||||||  ||||||||||| ||||||||  ||||||||| ||||| ||||||| |||||||| | ||| |||||||||||||||||    
T  39403205 caaagaggtatggtacgaactcgatcattatctatgaattcaaccaagcaaactgaacacgtttctttttcagactaagtagcagtattgtagatgaaag 39403304  T
Q  208 acggaataagatttataacaaactcatgtaagccctgtggag 249  Q
    | || ||| |||||||||||||||||||||||||||||||||    
T  39403305 atggtatatgatttataacaaactcatgtaagccctgtggag 39403346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 127
Target Start/End: Original strand, 41706173 - 41706264
Alignment:
Q  36 gagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggagggtacgaac 127  Q
    |||||||| ||||||||||||| || ||||||||||||| |||||||||| ||  |||||||| ||||||| || ||||| || ||||||||    
T  41706173 gagcgacagagaggacagttagcgtgtgaacgaagccaagcatcaatgcagtcaagatgaaaagtgtgggaacagagaggaagagtacgaac 41706264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 35351756 - 35351697
Alignment:
Q  67 gaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggagggtacgaa 126  Q
    |||||||| ||||||||||| || |||| ||||||||||| |||||||||||||| ||||    
T  35351756 gaagccaagcatcaatgcaagcgagatggaaaatgtgggaacaaagagggagggtgcgaa 35351697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 123
Target Start/End: Complemental strand, 35374881 - 35374793
Alignment:
Q  35 ggagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggagggtac 123  Q
    |||||||||||||||||| ||||  |||  |||||||||| | |||||||| ||| |||| ||  ||||||| ||||||||||| ||||    
T  35374881 ggagcgacatagaggacaattaggttttttacgaagccaagcttcaatgcattcgagatggaagctgtgggaacaaagagggagtgtac 35374793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 35356921 - 35356839
Alignment:
Q  36 gagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggag 118  Q
    ||||||||||||||||| ||||  | |  | |||||||| ||||||||||| || |||| ||| ||||||| |||||||||||    
T  35356921 gagcgacatagaggacaattaggttgtttatgaagccaagcatcaatgcaagcgagatggaaagtgtgggaacaaagagggag 35356839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 310 - 357
Target Start/End: Complemental strand, 31209439 - 31209392
Alignment:
Q  310 aggaggaggaggagttagagaggaaccggcggtaagtgtggactatga 357  Q
    |||||||||||||||||| | ||||||||||| |||||||||||||||    
T  31209439 aggaggaggaggagttagggtggaaccggcggcaagtgtggactatga 31209392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 31209554 - 31209493
Alignment:
Q  198 tagatgaaagacggaataagatttataacaaactcatgtaagccctgtggagcctcctcctc 259  Q
    |||||||| |||||||||  || ||||||| |||||| |||||| |||||||||||||||||    
T  31209554 tagatgaaggacggaatagcatatataacagactcatctaagccatgtggagcctcctcctc 31209493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 31209728 - 31209653
Alignment:
Q  36 gagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaa 111  Q
    |||||||| | ||||||| ||| ||| |||||||||||||| ||||| |||| | |||| ||| ||||||||||||    
T  31209728 gagcgacacaaaggacagctagggttagaacgaagccaaacgtcaatacaattgagatggaaagtgtgggagcaaa 31209653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University