View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21191_low_4 (Length: 566)
Name: NF21191_low_4
Description: NF21191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21191_low_4 |
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| [»] scaffold0653 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 9 - 548
Target Start/End: Original strand, 31453807 - 31454354
Alignment:
| Q |
9 |
agcagagaagtaattttttgttggaatgttgttataagtttaattttgatttaaggttatgttaaaagtttacagcgttgaagaaatcacactgaatatt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31453807 |
agcagagaagtaattttttgttggaatgttgttataagtttaattttgatttcaggttatgttaaaagtttacagcgttgaagaaatcacactgaatatt |
31453906 |
T |
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| Q |
109 |
tgtaactttagaattagtgtatggttatcaaaatattttcaaactttaacaattgttg-tgtaaaaaat-ctttacactattagtgtatggttatcgaat |
206 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
31453907 |
tgtaactttagaattagtgtatgggtatcaaaatgttttcaaactttaacaatttttgttgtaaaaaatactttacactattagtgtatggttatcgaat |
31454006 |
T |
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| Q |
207 |
gtccttttatttaactggagagctgatttttgaaattaaattatcgccttttgatttcatgtagatgttgtttcctgttaattatcatttacagattaga |
306 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31454007 |
gtccttttatttaaccggagagctgatttttgagattaaattattgccttttgatttcatgtagatgttgtttcctgttaattatcatttacagattaga |
31454106 |
T |
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| Q |
307 |
gagactcattttcctc-tgttatttttt-----gttttgttaagtaacttttgtttactaactgtaaaatttgctatggtggttgtagtttcctgtgggt |
400 |
Q |
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|||||||||||||||| |||| |||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||| |
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| T |
31454107 |
gagactcattttcctcttgtttttttttttttgtttttgttaagtaacttttgtttattaactgtaaaatttgccatggtggttgcagtttcctgtgggt |
31454206 |
T |
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| Q |
401 |
aggatccacagacagctgaagcaaagagtccaagctaatggacgtgtcggagcaacagctgcagtgtatttggcatccattctggagtatctgactgctg |
500 |
Q |
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| T |
31454207 |
aggatccacagacagctgaagcaaagagtccaagctaatggacgtgtcggagcaacagctgcagtgtatttggcatccattctggagtatctgactgctg |
31454306 |
T |
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| Q |
501 |
aagttctggagctggctggaaatgctagcaaagatttgaaggtgaaga |
548 |
Q |
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| T |
31454307 |
aagttcttgagctggctggaaatgctagcaaagatttgaaggtgaaga |
31454354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 387 - 548
Target Start/End: Original strand, 51448939 - 51449100
Alignment:
| Q |
387 |
agtttcctgtgggtaggatccacagacagctgaagcaaagagtccaagctaatggacgtgtcggagcaacagctgcagtgtatttggcatccattctgga |
486 |
Q |
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| T |
51448939 |
agtttcctgtgggtaggatccacagacagctgaagcacagagtccaagctaatggacgtgtgggagcaacagctgcagtgtatctggcatcaattctgga |
51449038 |
T |
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| Q |
487 |
gtatctgactgctgaagttctggagctggctggaaatgctagcaaagatttgaaggtgaaga |
548 |
Q |
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| T |
51449039 |
gtatctgactacagaagtacttgaactggctggaaatgcaagtagagatttgaatgtgaaga |
51449100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 387 - 548
Target Start/End: Original strand, 17200165 - 17200326
Alignment:
| Q |
387 |
agtttcctgtgggtaggatccacagacagctgaagcaaagagtccaagctaatggacgtgtcggagcaacagctgcagtgtatttggcatccattctgga |
486 |
Q |
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|||||| ||||||||||||||||| | ||||||||||||||||||| |||||||||||||| ||||||||||||| ||| ||| ||||||| ||||| || |
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| T |
17200165 |
agtttcatgtgggtaggatccacaaatagctgaagcaaagagtccatgctaatggacgtgtgggagcaacagctgtagtttatctggcatcaattctaga |
17200264 |
T |
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| Q |
487 |
gtatctgactgctgaagttctggagctggctggaaatgctagcaaagatttgaaggtgaaga |
548 |
Q |
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| T |
17200265 |
gtatctgactacagaagttttagaaccggctgaaaatgcaaccaatgatttgaagttgaaga |
17200326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 394 - 548
Target Start/End: Complemental strand, 9279972 - 9279818
Alignment:
| Q |
394 |
tgtgggtaggatccacagacagctgaagcaaagagtccaagctaatggacgtgtcggagcaacagctgcagtgtatttggcatccattctggagtatctg |
493 |
Q |
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||||||||||||||||| ||||||||||||||| |||||| ||| ||||||| ||||||| | ||||||| ||| ||||||| ||||| ||||||||| |
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| T |
9279972 |
tgtgggtaggatccacaaacagctgaagcaaagggtccaatataacagacgtgtgggagcaataactgcagtttatctggcatcaattctagagtatctg |
9279873 |
T |
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| Q |
494 |
actgctgaagttctggagctggctggaaatgctagcaaagatttgaaggtgaaga |
548 |
Q |
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| T |
9279872 |
actgcggaagttcttgaactggctggaaatgcaggttaagatttgaaggtgaaga |
9279818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 394 - 548
Target Start/End: Complemental strand, 9290943 - 9290789
Alignment:
| Q |
394 |
tgtgggtaggatccacagacagctgaagcaaagagtccaagctaatggacgtgtcggagcaacagctgcagtgtatttggcatccattctggagtatctg |
493 |
Q |
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||||||||||||||||| ||||||||||||||| |||||| ||| ||||||| ||||||| | ||||||| ||| ||||||| ||||| ||||||||| |
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| T |
9290943 |
tgtgggtaggatccacaaacagctgaagcaaagggtccaatataacagacgtgtgggagcaataactgcagtttatctggcatcaattctagagtatctg |
9290844 |
T |
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| Q |
494 |
actgctgaagttctggagctggctggaaatgctagcaaagatttgaaggtgaaga |
548 |
Q |
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| T |
9290843 |
actgcggaagttcttgaactggctggaaatgcaggttaagatttgaaggtgaaga |
9290789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 407 - 548
Target Start/End: Complemental strand, 9247506 - 9247365
Alignment:
| Q |
407 |
cacagacagctgaagcaaagagtccaagctaatggacgtgtcggagcaacagctgcagtgtatttggcatccattctggagtatctgactgctgaagttc |
506 |
Q |
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|||||||||| |||||| ||| ||||| |||| | | ||| |||||||| ||||||| ||| ||||| ||||| |||||||||||||| ||||||| |
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| T |
9247506 |
cacagacagcagaagcatagactccaaactaacgcatatgtgggagcaacgactgcagtttatccggcataaattctagagtatctgactgcggaagttc |
9247407 |
T |
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| Q |
507 |
tggagctggctggaaatgctagcaaagatttgaaggtgaaga |
548 |
Q |
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| T |
9247406 |
ttgaactggctggaaattcaaataaagatttgaaggtgaaga |
9247365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 548
Target Start/End: Original strand, 6424 - 6523
Alignment:
| Q |
449 |
ggagcaacagctgcagtgtatttggcatccattctggagtatctgactgctgaagttctggagctggctggaaatgctagcaaagatttgaaggtgaaga |
548 |
Q |
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| T |
6424 |
ggagcaacgactgcagtttatccggcataaattctagagtatctgactgcggaagttcttgaactggctggaaattcaaataaagatttgaaggtgaaga |
6523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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