View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21191_low_5 (Length: 531)

Name: NF21191_low_5
Description: NF21191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21191_low_5
NF21191_low_5
[»] chr1 (3 HSPs)
chr1 (203-513)||(22902011-22902333)
chr1 (161-194)||(22902351-22902384)
chr1 (204-320)||(18554064-18554180)
[»] chr7 (4 HSPs)
chr7 (203-467)||(19976055-19976311)
chr7 (37-159)||(8125748-8125861)
chr7 (158-194)||(19976331-19976367)
chr7 (476-513)||(19975994-19976031)
[»] chr3 (3 HSPs)
chr3 (205-513)||(2430233-2430551)
chr3 (206-327)||(31618173-31618294)
chr3 (157-194)||(2430180-2430217)
[»] chr8 (3 HSPs)
chr8 (203-474)||(16309110-16309369)
chr8 (477-511)||(16309061-16309095)
chr8 (158-194)||(16309388-16309424)
[»] chr6 (3 HSPs)
chr6 (204-513)||(12188712-12189018)
chr6 (209-324)||(1605204-1605318)
chr6 (158-194)||(12188655-12188691)
[»] chr5 (4 HSPs)
chr5 (432-513)||(14087433-14087514)
chr5 (209-325)||(39290030-39290146)
chr5 (209-325)||(39383190-39383306)
chr5 (296-349)||(14088859-14088913)
[»] chr2 (1 HSPs)
chr2 (209-324)||(9113226-9113341)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 203 - 513
Target Start/End: Complemental strand, 22902333 - 22902011
Alignment:
Q  203 cccgagctgagtgggttaaagcgggtccgcgggtcagacgggtcataaacgcgggttcacaagggtatacatgggtgtaggcgggtaactaaccttcacc 302  Q
    ||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  22902333 cccgagctgagtgggttaaagcgggtccgtgagtcaaacgggtcataaacgcgggttcacaagggtatacatgggtgtaggcgggtaacggaccttcacc 22902234  T
Q  303 cgcgagtacccgaacccgcccgtatttgattattaaaacgacgtcgttttaatattgaagagtggagagacatactcactaaccctagaagactcattct 402  Q
    |||| |||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22902233 cgcgggtacccgaacccgctcgtattggattgttaaaacgacgtcgttttaatattgaagagtggggagacatactcactaaccctagaagactcattct 22902134  T
Q  403 tcatttcatttcttctctcgcctcacacacacactctttcaccttcctcttcaaactctagtgcca------------ccgccggttctaaccacaacca 490  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||            ||| || |||||||||||||||    
T  22902133 tcatttcatttcttctctcgccgcacacacacactctttcaccttcctcttcaaaccctagtgccagtgccgccgccgccgtcgcttctaaccacaacca 22902034  T
Q  491 cctcaccatcaaatcctcctacc 513  Q
    |||||||||||||||||||||||    
T  22902033 cctcaccatcaaatcctcctacc 22902011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 22902384 - 22902351
Alignment:
Q  161 ggctggacaaggacccgcgacccgtcccaacccg 194  Q
    |||||||||||||||||||||||| |||||||||    
T  22902384 ggctggacaaggacccgcgacccggcccaacccg 22902351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 320
Target Start/End: Original strand, 18554064 - 18554180
Alignment:
Q  204 ccgagctgagtgggttaaagcgggtccgcgggtcagacgggtcataaacgcgggttcacaagggtatacatgggtgtaggcgggtaactaaccttcaccc 303  Q
    ||||| ||||||||||||| |||||  |||||| | |||||||| |||  |||||  ||||||||||  ||||| |  |||||||||   | ||| ||||    
T  18554064 ccgagttgagtgggttaaatcgggtttgcgggttaaacgggtcacaaatacgggtatacaagggtatgaatgggcggtggcgggtaagggaacttaaccc 18554163  T
Q  304 gcgagtacccgaacccg 320  Q
    ||| |||||||||||||    
T  18554164 gcgggtacccgaacccg 18554180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 203 - 467
Target Start/End: Complemental strand, 19976311 - 19976055
Alignment:
Q  203 cccgagctgagtgggttaaagcgggtccgcgggtcagacgggtcataaacgcgggttcacaagggtatacatgggtgtaggcgggtaactaaccttcacc 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||  |||||||||    
T  19976311 cccgagctgagtgggttaaagcgggtccgcgggtcagacgggtcataaacccggattcacaagggtatacatgggtgtaggcgggtaacagaccttcacc 19976212  T
Q  303 cgcgagtacccgaacccgcccgtatttgattattaaaacgacgtcgttttaatattgaagagtggagagacatactcactaaccctagaagactcattct 402  Q
    |||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||        |||||||||||||||||||||||    
T  19976211 cgcgggtacccgaacccgcccgtatttaattattaaaaccacgtcgttttaatattgaagagtggggag--------actaaccctagaagactcattct 19976120  T
Q  403 tcatttcatttcttctctcgcctcacacacacactctttcaccttcctcttcaaactctagtgcc 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19976119 tcatttcatttcttctctcgcctcacacacacactctttcaccttcctcttcaaaccctagtgcc 19976055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 8125748 - 8125861
Alignment:
Q  37 gggatgcagatgacattatgcgtcgatggcccctattagggatatatatataccctagcatagcagtataaaggttatgaaattcttacatcatataaaa 136  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||||      ||||||| | ||||| ||||||||| |||||||||||| ||||||  ||    
T  8125748 gggatgcagatgacattatacgttgatggccc-tattagggatat------accctagtagagcagcataaaggttctgaaattcttacctcatat--aa 8125838  T
Q  137 ttgtaattagtattccacgttta 159  Q
    ||||||||||| |||||| ||||    
T  8125839 ttgtaattagtgttccacattta 8125861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 19976367 - 19976331
Alignment:
Q  158 tagggctggacaaggacccgcgacccgtcccaacccg 194  Q
    ||||||||||||||||||||||||||| |||||||||    
T  19976367 tagggctggacaaggacccgcgacccggcccaacccg 19976331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 513
Target Start/End: Complemental strand, 19976031 - 19975994
Alignment:
Q  476 ttctaaccacaaccacctcaccatcaaatcctcctacc 513  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  19976031 ttctaaccccaacaacctcaccatcaaatcctcctacc 19975994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 205 - 513
Target Start/End: Original strand, 2430233 - 2430551
Alignment:
Q  205 cgagctgagtgggttaaagcgggtccgcgggtcagacgggtcataaacgcgggttcacaagggtatacatgggtgtaggcgggtaactaaccttcacccg 304  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||| ||||||||||||| | |||||||||||  ||||||| |||    
T  2430233 cgagctgagtgggttaaagcgggtccgcggctcaaacgggtcataaatgcgggttcacatgggtatacatgggcggaggcgggtaacggaccttcatccg 2430332  T
Q  305 cgagtacccgaacccgcccgtatttgatta-ttaaaacgacgtcgtttta--atattgaagagtggagagacatactcactaaccctaga--agactcat 399  Q
    || |||||||||||| |||||||| ||||| | |||||||||||||||||  |||||||||||||| |||    ||||||||||||||||   |||||||    
T  2430333 cgggtacccgaacccacccgtattggattagtaaaaacgacgtcgttttagtatattgaagagtggggag----actcactaaccctagatctgactcat 2430428  T
Q  400 tc--ttcatttcatttcttc--------tctcgc-ctcacacacacactctttcaccttcctcttcaaactctagtgccaccgccggttctaaccacaac 488  Q
    ||  |||| |||||||||||        |||| | ||| | | ||||||||||||||||||||||||||| |||||||| ||||||  ||||||||| ||    
T  2430429 tcatttca-ttcatttcttctaaaaaattctctcactcgc-ctcacactctttcaccttcctcttcaaaccctagtgccgccgccgcctctaaccaccac 2430526  T
Q  489 cacctcaccatcaaatcctcctacc 513  Q
    |||||||||||||||||||||||||    
T  2430527 cacctcaccatcaaatcctcctacc 2430551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 327
Target Start/End: Original strand, 31618173 - 31618294
Alignment:
Q  206 gagctgagtgggttaaagcgggtccgcgggtcagacgggtcataaacgcgggttcacaagggtatacatgggtgtaggcgggtaactaaccttcacccgc 305  Q
    ||||||| |||||||||||||||||||||| || ||||||  ||||  ||| | |||||||||||| |||||   ||  |||| |   | ||||||||||    
T  31618173 gagctgaatgggttaaagcgggtccgcgggccaaacgggttgtaaatacggttacacaagggtataaatgggcagagaggggtgaaggagcttcacccgc 31618272  T
Q  306 gagtacccgaacccgcccgtat 327  Q
    | ||||||||||||||||||||    
T  31618273 gggtacccgaacccgcccgtat 31618294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 2430180 - 2430217
Alignment:
Q  157 ttagggctggacaaggacccgcgacccgtcccaacccg 194  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  2430180 ttagggctggacaaggacccacgacccggcccaacccg 2430217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 203 - 474
Target Start/End: Complemental strand, 16309369 - 16309110
Alignment:
Q  203 cccgagctgagtgggttaaagcgggtccgcgggtcagacgggtcataaacgcgggttcacaagggtatacatgggtgtaggcgggtaactaaccttcacc 302  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||   |||||||||||  |||||||||    
T  16309369 cccgagctgagtgggttaaagcgggtccgcgggtcaaacgggtcatataagcgggttcacaagggtatacatgggcagaggcgggtaacggaccttcacc 16309270  T
Q  303 cgcgagtacccgaacccgcccgtatttgattattaaaacgacgtcgttttaatattgaagagtggagagacatactcactaaccctagaagactcattc- 401  Q
    |||| |||||||||||||||||| |                     ||||||||||||||||||| |||||| |  |||||||||||||||||||||||     
T  16309269 cgcgggtacccgaacccgcccgttt---------------------ttttaatattgaagagtggggagacagaaacactaaccctagaagactcattca 16309191  T
Q  402 -ttcatttcatttcttctctcgcc--------tcacacacacactctttcaccttcctcttcaaactctagtgccaccgccg 474  Q
     |||||| || |||||||||||||        |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16309190 tttcattcca-ttcttctctcgcctcacactgtcacacacacactctttcaccttcctcttcaaaccctagtgccaccgccg 16309110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 477 - 511
Target Start/End: Complemental strand, 16309095 - 16309061
Alignment:
Q  477 tctaaccacaaccacctcaccatcaaatcctccta 511  Q
    |||||||||||||||||||||||||||||||||||    
T  16309095 tctaaccacaaccacctcaccatcaaatcctccta 16309061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 16309424 - 16309388
Alignment:
Q  158 tagggctggacaaggacccgcgacccgtcccaacccg 194  Q
    ||||||||||||||||||||||||||| |||||||||    
T  16309424 tagggctggacaaggacccgcgacccggcccaacccg 16309388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 204 - 513
Target Start/End: Original strand, 12188712 - 12189018
Alignment:
Q  204 ccgagctgagtgggttaaagcgggtccgcgggtcagacgggtcataaacgcgggttcacaagggtatacatgggtgtaggcgggtaactaaccttcaccc 303  Q
    ||||||||||||||||||||| ||||||||||||| ||| |||||||| |||||||||||||||||||||||||   |||||||||||  |||||||||     
T  12188712 ccgagctgagtgggttaaagcaggtccgcgggtcaaacgtgtcataaatgcgggttcacaagggtatacatgggcagaggcgggtaacggaccttcacct 12188811  T
Q  304 gcgagtacccgaacccgcccgtatttgatta-ttaaaacgacgtcgttttaatattgaagagtggagagacatactcactaaccctagaagactcattc- 401  Q
    ||| ||||||||||||||| ||||| ||| | | ||||||||||||||      ||||||||||| |||||     |||||||||||||   || |  |     
T  12188812 gcgggtacccgaacccgccagtattggataagtaaaaacgacgtcgtt------ttgaagagtggggagac-----cactaaccctaga--tctaaccca 12188898  T
Q  402 ttcatttcatttcttc--------tctcgc-ctcacacacacactctttcaccttcctcttcaaactctagtgccaccgccggttctaaccacaaccacc 492  Q
    ||||||||||||||||        |||| |  |||| | ||||||||||||||||||||||||||| |||||||| ||||||  ||||||||| ||||||    
T  12188899 ttcatttcatttcttctaaaaaattctctcattcac-ctcacactctttcaccttcctcttcaaaccctagtgccgccgccgcatctaaccaccaccacc 12188997  T
Q  493 tcaccatcaaatcctcctacc 513  Q
     ||||||||||||||||||||    
T  12188998 acaccatcaaatcctcctacc 12189018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 324
Target Start/End: Original strand, 1605204 - 1605318
Alignment:
Q  209 ctgagtgggttaaagcgggtccgcgggtcagacgggtcataaacgcgggttcacaagggtatacatgggtgtaggcgggtaactaaccttcacccgcgag 308  Q
    ||||| |||||||| ||||||| ||||||| |||||| | | |  |||||  | |||||| |||||||||| ||||||||||   | ||||||||| | |    
T  1605204 ctgagcgggttaaaacgggtcctcgggtca-acgggttacagatacgggtatataagggtttacatgggtggaggcgggtaaaggatcttcacccgtggg 1605302  T
Q  309 tacccgaacccgcccg 324  Q
    ||||||||||||||||    
T  1605303 tacccgaacccgcccg 1605318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 12188655 - 12188691
Alignment:
Q  158 tagggctggacaaggacccgcgacccgtcccaacccg 194  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  12188655 tagggctagacaaggacccgcgacccggcccaacccg 12188691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 432 - 513
Target Start/End: Complemental strand, 14087514 - 14087433
Alignment:
Q  432 cacactctttcaccttcctcttcaaactctagtgccaccgccggttctaaccacaaccacctcaccatcaaatcctcctacc 513  Q
    ||||||||||||||||||||  ||||| |||||||| |||||| |||| ||||| |||||||| || |||||||||| ||||    
T  14087514 cacactctttcaccttcctccacaaaccctagtgccgccgccgtttctcaccaccaccacctcgccctcaaatcctcatacc 14087433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 325
Target Start/End: Complemental strand, 39290146 - 39290030
Alignment:
Q  209 ctgagtgggttaaagcgggtccgcgggtcagacgggtcataaacgcgggttcacaagggtatacatgggtgtaggcgggtaactaaccttcacccgcgag 308  Q
    |||||||||||||  ||||||||||||||| |||||||| |||  ||||| |||||||||||  | |||   ||||||| |    | ||||||||||| |    
T  39290146 ctgagtgggttaattcgggtccgcgggtcaaacgggtcacaaatacgggtacacaagggtatcaacgggcaaaggcggggagaggaacttcacccgcggg 39290047  T
Q  309 tacccgaacccgcccgt 325  Q
    |||||||||||||||||    
T  39290046 tacccgaacccgcccgt 39290030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 325
Target Start/End: Original strand, 39383190 - 39383306
Alignment:
Q  209 ctgagtgggttaaagcgggtccgcgggtcagacgggtcataaacgcgggttcacaagggtatacatgggtgtaggcgggtaactaaccttcacccgcgag 308  Q
    |||||||||||||  ||||||||||||||| |||||||| |||  ||||| |||||||||||  | |||   ||||||| |    | ||||||||||| |    
T  39383190 ctgagtgggttaattcgggtccgcgggtcaaacgggtcacaaatacgggtacacaagggtatcaacgggcaaaggcggggagaggaacttcacccgcggg 39383289  T
Q  309 tacccgaacccgcccgt 325  Q
    |||||||||||||||||    
T  39383290 tacccgaacccgcccgt 39383306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 14088913 - 14088859
Alignment:
Q  296 cttcacccgcgagtacccgaacccgcccgtatttgattatta-aaacgacgtcgt 349  Q
    ||||||||||| |||||||||||||||||||| ||||||||| |||||| |||||    
T  14088913 cttcacccgcgggtacccgaacccgcccgtatatgattattagaaacgatgtcgt 14088859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 324
Target Start/End: Complemental strand, 9113341 - 9113226
Alignment:
Q  209 ctgagtgggttaaagcgggtccgcgggtcagacgggtcataaacgcgggttcacaagggtatacatgggtgtaggcgggtaactaaccttcacccgcgag 308  Q
    |||||||||||||||||||||| ||||||| |||| ||| ||   |||||  ||||||||||| ||||| | || ||||| |   |  |||||||||| |    
T  9113341 ctgagtgggttaaagcgggtcctcgggtcaaacggatcagaactacgggtatacaagggtatatatgggcggagacgggtgaaggaatttcacccgcggg 9113242  T
Q  309 tacccgaacccgcccg 324  Q
    ||||||||||||||||    
T  9113241 tacccgaacccgcccg 9113226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University